SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75518

Length: 366 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75518
CGTCGTGACCTTGGCTGTCACTCATCACTGGATTGGTGCCAAGAATATTCTGATATTTCTTTAGGGCACAATCTCTCATGGATTTAGATACACTACTGGAAATGTGAAGCTGCATGATTATTTGAATGCTGACTGGGCAGGCAGTGTGGAGTATCACAAGAGAACTTCCAAGTGCTGGTTTTCTTTGGGCTCTGTTCGATATCCTGGATGAGCAGGAAGTAGAGGTTGGTTGCTATAAGCACTGCTGAGACAGAATACATAGCTATGAGTATGATCTCGTGTAAAGCTACCTGGTTGTGGAAGGTCTTCAGTGAGCTATTTGTACACATGATGGATATCACCGCGATCCTCTATGTCAACTATGGG

Ace file of the UniGene sp_v1.1_unigene75518

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH	-	-	9.0e-11	38%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	32%
Blast2go	hypothetical protein VITISV_043230 [Vitis vinifera]	-	-	1.71579e-11	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 18 aas, your sequence is shorter than subject: 70 - 542

Fln protein: VVTLAVTHHWIGAKNILIFL*GTISHGFRYTTGNVKLHDYLNADWAGSVEYHKRTSKCWFSLGSVRYPG*

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCACTGGATTGGTGCCAAGAATATTCTGATATTTCTTTAGGGCACAATCTCTCATGGATTTAGATACACTACTGGAAATGTGAAGCTGCATGATTATTTGAATGCTGACTGGGCAGGCAGTGTGGAGTATCACAAGAGAACTTCCAAGTGCTGGTTTTCTTTGGGCTCTGTTCGATATCCTGGATGAGCAGGAAGTAGAGGTTGGTTGCTATAAGCACTGCTGAGACAGAATACATAGCTATGAGTATGATCTCGTGTAAAGCTACCTGGTTGTGGAAGGTCTTCAGTGAGCTATTTGTACACATGATGGATATCACCGCGATCCTCTATGTCAACTATGGG

Fln Alignment:

sp_v1.1_unigene75518___HWIGAKNILIFL*GTISHGFRYTTGN-----VKLHDYLNADWAGSVEYHKRTSKCWFSL
Q9M5J7_______________HWTTVKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain