SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75448

Length: 350 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75448
CGTCGTGACCTTGGCTGTCACTCTTTGGTGGCCTTGTTAACCTGCAGACTTTAGCTCTGTATGGAACTGAAATTTCAGGACCAATACCTCCAGAGTTGGGTAAGTGCACTGAACTAAGAATCTTTATCTACATATGAATAGACTCTCTGGACCCATACCTCCAGAGCTGGGGAGGTTGAAACAGTTAACTAGCCTTCTTCTATGGGGAAATTTCTTGGAAGGTCCCATTCCTCCAGAGATTGGCAACTGCTCTTCTCTTGTAATACTGGACTTCTCCGCAAACAAGATCTCTGGTTCCATTCCCAAGGAACTGGGTTTATTGGTAGCATTGGACCAGCTTCATCTCACTG

Ace file of the UniGene sp_v1.1_unigene75448

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat receptor protein kinase EXS, putative n=1 Tax=Ricinus communis RepID=B9SM68_RICCO	-	-	2.0e-34	70%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	43%
Blast2go	leucine-rich repeat receptor protein kinase exs	-	-	6.08012e-36	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	6.08012e-36	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureUnexpected stop codon in the beginning of your sequence, Distance to subject end: 518 aas, your sequence is shorter than subject: 117 - 1145

Fln protein: S*PWLSLFGGLVNLQTLALYGTEISGPIPPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLVALDQLHLT

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCTTTGGTGGCCTTGTTAACCTGCAGACTTTAGCTCTGTATGGAACTGAAATTTCAGGACCAATACCTCCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTATTGGTAGCATTGGACCAGCTTCATCTCACTG

Fln Alignment:

sp_v1.1_unigene75448___PWLSLFGGLVNLQTLALYGTEISGPIPPELxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVG*VH*TKNLYLHMNRLSGPIPPELGRLKQLTSLLLWGNFLEGPIPPEIGNCSSLVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Q9FEU2_______________PIPSSLGSCDNLQSLDLSHNRLTGSIPPSLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLGFLHGLQVVDLSANELTGLIPANLGNLVALTKLTLNGNALSGAIPWEISRCTNLQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain