SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75339

Length: 343 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75339
CGTCGTGACCTTGGCTGTCACTAATTTTGATTTCTCTGGCTATTCCTCAAAGCTGAAGCAAGTTTTGGAGATCGGACAGGTGCAACTTAACAACTTGGCCGTGGCTTCTGACGTGGGAAAAACGCTGGGATGGATTGCAGGATATGCCATGCGTCGTTTGCCCCTCTGGGCAGTTCTGTTTATATCCTCCTTCCTAGGACTTGTGGGCTATGGAGTCCAGTGGCTGGTTATCACGGAGAAGATATCAGCCAAGTACTGGCAAGTATGTGTTTATTTGCCATTCTCATTGATTTCATTTAATTTCTCATAATTCCCCAAANCATATAGAATTGTGACAGAAGTG

Ace file of the UniGene sp_v1.1_unigene75339

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nodulin-related	-	-	1.0e-23	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	major facilitator protein	-	-	3.21371e-23	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nodulin-like	IPR010658	-	3.21371e-23	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 486 aas, your sequence is shorter than subject: 103 - 626

Fln protein: VVTLAVTNFDFSGYSSKLKQVLEIGQVQLNNLAVASDVGKTLGWIAGYAMRRLPLWAVLFISSFLGLVGYGVQWLVITEKISAKYWQVCVYLPFSLISFNFS*

Protein Length: 104

Fln nts: CGTCGTGACCTTGGCTGTCACTAATTTTGATTTCTCTGGCTATTCCTCAAAGCTGAAGCAAGTTTTGGAGATCGGACAGGTGCAACTTAACAACTTGGCCGTGGCTTCTGACGTGGGAAAAACGCTGGGATGGATTGCAGGATATGCCATGCGTCGTTTGCCCCTCTGGGCAGTTCTGTTTATATCCTCCTTCCTAGGACTTGTGGGCTATGGAGTCCAGTGGCTGGTTATCACGGAGAAGATATCAGCCAAGTACTGGCAAGTATGTGTTTATTTGCCATTCTCATTGATTTCATTTAATTTCTCATAATTCCCCAAAaCATATAGAATTGTGACAGAAGTG

Fln Alignment:

sp_v1.1_unigene75339___VVTLAVTNFDFSGYSSKLKQVLEIGQVQLNNLAVASDVGKTLGWIAGYAMRRLPLWAVLFISSFLGLVGYGVQWLVITEKI-SAKYWQVCVYL
B8LRH5_______________VQAIAGNNYTFSNYSVALKSILDVNQVQLNNLSVAKDVGKAFGLVAGFASDYLPAWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain