SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75274

Length: 261 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75274
CGTCGTGACCTTGGCTGTCACTCAAGTATTGGATGATCTCTTTCTAGCACGATCATCCAGACTCATTGAGGACTGCAAGAAGAATCTAGCCACAAAGTTCGATATGAAGGATCTGGGACAAATGCACTACTTCCTAGGGTTGGAAGTTTGGCAGTAGAAAGGAGAAATCTTCCTTGGGCAAGGGAGGTATGCTACAAAAATCCTAAAAAGGTTTGGGATGGGAGACTATAGATCTATGGCTACACCAATTATCACCAACTG

Ace file of the UniGene sp_v1.1_unigene75274

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative copia-type polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FWI2_ORYSJ	-	-	5.0e-13	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	retrotransposon unclassified	-	-	8.70253e-13	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 107 aas, your sequence is shorter than subject: 86 - 363

Fln protein: VVTLAVTQVLDDLFLARSSRLIEDCKKNLATKFDMKDLGQMHYFLGLEVWQ*KGEIFLGQGRYATKILKRFGMGDYRSMATPIITN

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTATTGGATGATCTCTTTCTAGCACGATCATCCAGACTCATTGAGGACTGCAAGAAGAATCTAGCCACAAAGTTCGATATGAAGGATCTGGGACAAATGCACTACTTCCTAGGGTTGGAAGTTTGGCAGTAGAAAGGAGAAATCTTCCTTGGGCAAGGGAGGTATGCTACAAAAATCCTAAAAAGGTTTGGGATGGGAGACTATAGATCTATGGCTACACCAATTATCACCAACTG

Fln Alignment:

sp_v1.1_unigene75274___LAVTQVLDDLFLARSSRLIEDCKKNLATKFDMKDLGQMHYFLGLEVWQ*KGEIFLGQGRYATKILKRFGMGDYRSMATPI
B8LKV8_______________LIVCLYVDDLIYT-GNLTIDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain