SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75188

Length: 493 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75188
CGTCGTGACCTTGGCTGTCACTCTTGACCTCCAGAGATGCGTGCATGCCGTGAGGATGATCGTTGAACTCCTGGACACACCATATCTGCGGAGATTTAATGGTGATCCCTCTCATGGCTTCAACTTCACTGGACCGCCGTTACCAAAGAACATATCGGACGACGCAGCCATGGCACAGATCTGCCGTGATACGTTGAGCACGTTGTGGCCTTGGCTGGATGATGTGAAGTTGGGTATGTGGTTAGCGAGAGGTATGAGGTGAAGGGAGTTGATAATCTGAGGATTGTTGATGCGTCAACGTTCACAGACAGTCCTGGAACCAACCCACAAGCCACCACTATGATGCTGGGCAGATATGTAGGAGTGAAGATTCTTCGAGAGCGGGCTGAATGAAAGCAACGGCCGAATGACTATTTGGTGTAGTAGTCGCTTTTCATTAATAAAGAATATCGAGAACCGCCCGATATCCGCATCACAGAGATTCTCACGCAGT

Ace file of the UniGene sp_v1.1_unigene75188

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	(R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putative; K08248 mandelonitrile lyase [EC:4.1.2.10]	-	-	3.0e-20	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	mandelonitrile lyase	-	-	7.89976e-36	79%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:4.1.2.1-	-	3.0e-20	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo sac development	GO:0009553	Biological Process	7.89976e-36	79%
Blast2go	cell-cell signaling	GO:0007267	Biological Process	7.89976e-36	79%
Blast2go	fatty acid omega-oxidation	GO:0010430	Biological Process	7.89976e-36	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXU5

Fln msg: Overlapping hits, possible frame ERROR between 235 and 217, your sequence is shorter than subject: 131 - 558

Fln protein: VVTLAVTLDLQRCVHAVRMIVELLDTPYLRRFNGDPSHGFNFTGPPLPKNISDDAAMAQICRDTLSTLWPWxxxxxxxxVVSERYEVKGVDNLRIVDASTFTDSPGTNPQATTMMLGRYVGVKILRERAE*

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCTTGACCTCCAGAGATGCGTGCATGCCGTGAGGATGATCGTTGAACTCCTGGACACACCATATCTGCGGAGATTTAATGGTGATCCCTCTCATGGCTTCAACTTCACTGGACCGCCGTTACCAAAGAACATATCGGACGACGCAGCCATGGCACAGATCTGCCGTGATACGTTGAGCACGTTGTGGCCTTGGxxxxxxxxxxxxxxxxxxxxxxxxGTGGTTAGCGAGAGGTATGAGGTGAAGGGAGTTGATAATCTGAGGATTGTTGATGCGTCAACGTTCACAGACAGTCCTGGAACCAACCCACAAGCCACCACTATGATGCTGGGCAGATATGTAGGAGTGAAGATTCTTCGAGAGCGGGCTGAATGAAAGCAACGGCCGAATGACTATTTGGTGTAGTAGTCGCTTTTCATTAATAAAGAATATCGAGAACCGCCCGATATCCGCATCACAGAGATTCTCACGCAGT

Fln Alignment:

sp_v1.1_unigene75188___LDLQRCVHAVRMIVELLDTPYLRRFNGDPSHGFNFTGPPLPKNISDDAAMAQICRDTLSTLWPWLxxxxxxYVVSERYEVKGVDNLRIVDASTFTDSPGTNPQATTMMLGRYVGVKILRERAE
A9NXU5_______________LDFERCVQGVRVIAQLLNTPSLRRSNASCFHGS-------PINMSDDAAMAQICRDTLSTVWHYHxxxxxxYVVNERYQVNGVDNLRIVDGSTYRDSPGTNPQATTMMLGRYMGVKILQEQAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain