SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75121

Length: 402 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75121
CGTCGTGACCTTGGCTGTCACTCAATTTCTGTTGGGAATGCCCTTGTGGACACATATGCTAAATGTGGGAGCAAAGAAGACGCACGCAAAGTATTTGATAAAATGCATAGACGAGATGTTGTTTCGTGGAATGCTATGATTGTGGGATGTGCCATGAATGGGTACGGCAGTGAAGCCCTACATCTCTTCGAACAAATGCAACAGTTTTGTATGCAACCAAATCAAATCACTTTTGTTGGTGTTCTCTCTGCTTGCTGCCATGCTGGCCTTGTGGATCATGGTTGGAAATATTTTGATAACATGGAACACAATTATAACATCACACCTACAGTGGAGCACTTTTGTTGCATGGTAGATCTTCTTGGTCGAGCTGGGCGCTTGGATGAAGCACAAACTTGATCA

Ace file of the UniGene sp_v1.1_unigene75121

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	8.0e-35	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	pentatricopeptide repeat-containing protein	-	-	2.04731e-38	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	2.04731e-38	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: W2: There is no M at the beginning, your sequence is shorter than subject: 133 - 232

Fln protein: RRDLGCHSISVGNALVDTYAKCGSKEDARKVFDKMHRRDVVSWNAMIVGCAMNGYGSEALHLFEQMQQFCMQPNQITFVGVLSACCHAGLVDHGWKYFDNMEHNYNITPTVEHFCCMVDLLGRAGRLDEAQT*

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTGTTGGGAATGCCCTTGTGGACACATATGCTAAATGTGGGAGCAAAGAAGACGCACGCAAAGTATTTGATAAAATGCATAGACGAGATGTTGTTTCGTGGAATGCTATGATTGTGGGATGTGCCATGAATGGGTACGGCAGTGAAGCCCTACATCTCTTCGAACAAATGCAACAGTTTTGTATGCAACCAAATCAAATCACTTTTGTTGGTGTTCTCTCTGCTTGCTGCCATGCTGGCCTTGTGGATCATGGTTGGAAATATTTTGATAACATGGAACACAATTATAACATCACACCTACAGTGGAGCACTTTTGTTGCATGGTAGATCTTCTTGGTCGAGCTGGGCGCTTGGATGAAGCACAAACTTGA___TCA

Fln Alignment:

sp_v1.1_unigene75121___ISVGNALVDTYAKCGSKEDARKVFDKMHRRDVVSWNAMIVGCAMNGYGSEALHLFEQMQQFCMQPNQITFVGVLSACCHAGLVDHGWKYFDNMEHNYNITPTVEHFCCMVDLLGRAGRLDEA
D5AB53_______________VFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLGRTGCLDEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain