SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene75030

Length: 392 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene75030
CGTCGTGACCTTGGCTGTCACTCAGTGTTCTCCCTGCATGTACCATATTAGCAGCTCTACAACAGGGCAAAGAGATCCATAATTATGCGATCAAGAGAGAACTCCAATCAAATGTTAGTGTGGGGAGTGCTCTTGTAGACATGTATGGTAAATGTGGAAATGTGGAGATTGCACGCAAAGTGTTTGACAAAATGAATAAAAGGGATGTGATCTTGTGGACTTCCCTAATTGCAGGCTATGCAATGCATGGTTATGGTGAGGATGCTCTTGCGCTTTTCCGCCATATGGAAATGAGTAATCTGAAACCGGACCATGTCACTTTTGTTGCATTGTTGTCAGCATGCAGCCACGCTGGCCTGATTAATGAAGGTTGGCAGTGCTTCGATCGCATG

Ace file of the UniGene sp_v1.1_unigene75030

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein n=2 Tax=Arabidopsis RepID=D7L3A6_ARALY	-	-	2.0e-33	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.35086e-34	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.35086e-34	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 240 aas, your sequence is shorter than subject: 130 - 795

Fln protein: S*PWLSLSVLPACTILAALQQGKEIHNYAIKRELQSNVSVGSALVDMYGKCGNVEIARKVFDKMNKRDVILWTSLIAGYAMHGYGEDALALFRHMEMSNLKPDHVTFVALLSACSHAGLINEGWQCFDRM

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTTCTCCCTGCATGTACCATATTAGCAGCTCTACAACAGGGCAAAGAGATCCATAATTATGCGATCAAGAGAGAACTCCAATCAAATGTTAGTGTGGGGAGTGCTCTTGTAGACATGTATGGTAAATGTGGAAATGTGGAGATTGCACGCAAAGTGTTTGACAAAATGAATAAAAGGGATGTGATCTTGTGGACTTCCCTAATTGCAGGCTATGCAATGCATGGTTATGGTGAGGATGCTCTTGCGCTTTTCCGCCATATGGAAATGAGTAATCTGAAACCGGACCATGTCACTTTTGTTGCATTGTTGTCAGCATGCAGCCACGCTGGCCTGATTAATGAAGGTTGGCAGTGCTTCGATCGCATG

Fln Alignment:

sp_v1.1_unigene75030___LSVLPACTILAALQQGKEIHNYAIKRELQSNVSVGSALVDMYGKCGNVEIARKVFDKMNKRDVILWTSLIAGYAMHGYGEDALALFRHMEMSNLKPDHVTFVALLSACSHAGLINEGWQCFDRM
B8LQA8_______________VSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain