SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene74948

Length: 357 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene74948
CGTCGTGACCTTGGCTGTCACTCATCTATTTATCTTGGTGACAATTTGGTCTCTTGGAGTGCTAAGAAGCAACCTACTGTATCTCGTTCCAGTTGTGAATCTGAATATCGTGCTCTTGCAAACACTGCTGCCAAACTTATTTGGCTTACGCATCTCCTTCGTGACCTCCAGGTTCTGATTCCACAACGACCTCTTCTCTTATGCCACAACAAGAGTGCTATTTTTTTGAGCTCCAATCCAGTTTCTCACAAGCGAGCCAAGCATGTTGCATTAGACTGTCATTTTCTTCGCGAACTTGTTGTCACTGGCAAACTTCAAACGCAATATGTGCCCTCTCATCTATAGGTTGCTGACATC

Ace file of the UniGene sp_v1.1_unigene74948

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	85%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	32%
Blast2go	disease resistance protein	-	-	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: your sequence is shorter than subject: 115 - 542

Fln protein: RRDLGCHSSIYLGDNLVSWSAKKQPTVSRSSCESEYRALANTAAKLIWLTHLLRDLQVLIPQRPLLLCHNKSAIFLSSNPVSHKRAKHVALDCHFLRELVVTGKLQTQYVPSHL*

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTATTTATCTTGGTGACAATTTGGTCTCTTGGAGTGCTAAGAAGCAACCTACTGTATCTCGTTCCAGTTGTGAATCTGAATATCGTGCTCTTGCAAACACTGCTGCCAAACTTATTTGGCTTACGCATCTCCTTCGTGACCTCCAGGTTCTGATTCCACAACGACCTCTTCTCTTATGCCACAACAAGAGTGCTATTTTTTTGAGCTCCAATCCAGTTTCTCACAAGCGAGCCAAGCATGTTGCATTAGACTGTCATTTTCTTCGCGAACTTGTTGTCACTGGCAAACTTCAAACGCAATATGTGCCCTCTCATCTATAG___GTTGCTGACATC

Fln Alignment:

sp_v1.1_unigene74948___VSWSAKKQPTVSRSSCESEYRALANTAAKLIWLTHLLRDLQVLIPQRPLLLCHNKSAIFLSSNPVSHKRAKHV
Q9M5J7_______________ISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIG-LVQQVVRLDCEIQSAIFMAKNPAYDSKTNHI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain