SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene74886

Length: 289 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene74886
CGTCGTGACCTTGGCTGTCACTCATATTGTAGTTGGTTCACTTAGACATATCTGGTATGATGCCTGTGAACTCTTTGGGAGGATATTTATATTACCTCACTTTTATAGGTGATTATTCTTGCAAGACCTGGATATACTTCTTGAAAAAGAAGGATGAAGTGTTCACTTGGTTTCGTCACTTCAAAGCCTTGATCGGGAATCAAATAAAAAAGAAGATCAAGATCTTAAGCACTGATAATGGGGATGAGTATGAATCCAATTAATGCCATGGCTTTTGCAAAGAGGTTGG

Ace file of the UniGene sp_v1.1_unigene74886

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE	-	-	1.0e-15	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	retrovirus-related pol polyprotein from transposon tnt 1-94	-	-	1.10354e-15	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Integrase, catalytic core	IPR001584	-	1.10354e-15	65%
Blast2go	Ribonuclease H-like domain	IPR012337	-	1.10354e-15	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 186 aas, your sequence is shorter than subject: 87 - 407

Fln protein: S*PWLSLIL*LVHLDISGMMPVNSLGGYLYYLTFIGDYSCKTWIYFLKKKDEVFTWFRHFKALIGNQIKKKIKILSTDNGDEYESN*

Protein Length: 88

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTGTAGTTGGTTCACTTAGACATATCTGGTATGATGCCTGTGAACTCTTTGGGAGGATATTTATATTACCTCACTTTTATAGGTGATTATTCTTGCAAGACCTGGATATACTTCTTGAAAAAGAAGGATGAAGTGTTCACTTGGTTTCGTCACTTCAAAGCCTTGATCGGGAATCAAATAAAAAAGAAGATCAAGATCTTAAGCACTGATAATGGGGATGAGTATGAATCCAATTAATGCCATGGCTTTTGCAAAGAGGTTGG

Fln Alignment:

sp_v1.1_unigene74886___LVHLDISGMMPVNSLGGYLYYLTFIGDYSCKTWIYFLKKKDEVFTWFRHFKALIGNQIKKKIKILSTDNGDEYESN*CHGFCK
B8LKX7_______________LVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain