SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene74703

Length: 379 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene74703
CGTCGTGACCTTGGCTGTCACTCATCCTTTGCTAAGATTTTATCTGATGTGCTGCCTGATAGACCTGTAACTGAATCAGATGACCAGTCTGCACTTGTTTATCTTATGATCGTCGTGACGTTGGCTGTGAGTTAAGATTTATATTGAGAATGAGTATTATTTTCAGGGTTTTTGGTTGGACATTGTTGGTACTTTTGAGAATATAAGCAAGAGATACGAGGCCATGGAAGCTGAACATACAGAGTTGAGTCGCAGATATGCTGAGAAGAGTGCAAGATTGTATGCAGTGAAGCGAGAGCGTTATTTGAAGGAGATTTGGGCTGGGCTTTTCGAGAGGAGGCCATTTGTGACTCATTTCGCTGGGTGTCAGCCCTGCAGT

Ace file of the UniGene sp_v1.1_unigene74703

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transferase, putative (EC:2.4.2.39)	-	-	1.0e-19	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	galactosyl transferase gma12 mnn10 family protein	-	-	5.96953e-43	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	5.96953e-43	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWS4

Fln msg: Separated hits, possible frame ERROR between 111 and 134, Distance to subject end: 49 aas, your sequence is shorter than subject: 127 - 479

Fln protein: RRDLGCHSSFAKILSDVLPDRPVTESDDQSALVYLMxxxxxxxxxKIYIENEYYFQGFWLDIVGTFENISKRYEAMEAEHTELSRRYAEKSARLYAVKRERYLKEIWAGLFERRPFVTHFAGCQPCS

Protein Length: 128

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTTTGCTAAGATTTTATCTGATGTGCTGCCTGATAGACCTGTAACTGAATCAGATGACCAGTCTGCACTTGTTTATCTTATGATxxxxxxxxxxxxxxxxxxxxxxxxTAAGATTTATATTGAGAATGAGTATTATTTTCAGGGTTTTTGGTTGGACATTGTTGGTACTTTTGAGAATATAAGCAAGAGATACGAGGCCATGGAAGCTGAACATACAGAGTTGAGTCGCAGATATGCTGAGAAGAGTGCAAGATTGTATGCAGTGAAGCGAGAGCGTTATTTGAAGGAGATTTGGGCTGGGCTTTTCGAGAGGAGGCCATTTGTGACTCATTTCGCTGGGTGTCAGCCCTGCAGT

Fln Alignment:

sp_v1.1_unigene74703___HSSFAKILSDVLPDRPVTESDDQSALVYLMIxxxxxxxxKIYIENEYYFQGFWLDIVGTFENISKRYEAMEAEHTELSRRYAEKSARLYAVKRERYLKEIWAGLFERRPFVTHFAGCQPCS
A9NWS4_______________YEPFAKILSDVLPDRALTESDDQSALIYLMIxxxxxxxxKIYIENEYFFQGYWLDIVGSFENITKIYDAMEAKHPDLRRRYAEKSARLYAGKRDRSLKEIWAGILQRRPFVTHFTGCQPCS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain