SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene74550

Length: 361 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene74550
CGTCGTGACCTTGGCTGTCACTCATCTTTTGTCTCTGAAGGGCGCAGCAGAGAAGGATATGCAGCTATTAGGATTCAGACAGCGTTCAGAGGATACCTGGCATTGGTTCGTGGACATATCGTGAGAAAGCAAGCAACCGAAACACTGAGGTGTATGCAATCCCTTGTTACGATCCAGGCTAGAGTTCGTGCTCGTAGTCTTCGAATGTCTGAAGGAGGGCAGGCAGGTCAGAGTAAACTTATGCAGAGACGCCACCAGGAATTTCGTCCAAGTAAATCAAGTGAAAGAAGGAACCCAAGCACTGGTAGTTTGAATGAAAGGGAGGAAAGGCACAAAGCAGACAAGATGCCAGAGTGAGATC

Ace file of the UniGene sp_v1.1_unigene74550

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calmodulin binding protein, putative	-	-	8.0e-16	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	protein	-	-	1.78248e-18	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	IQ motif, EF-hand binding site	IPR000048	-	1.78248e-18	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKS1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 420 aas, your sequence is shorter than subject: 119 - 672

Fln protein: RRDLGCHSSFVSEGRSREGYAAIRIQTAFRGYLALVRGHIVRKQATETLRCMQSLVTIQARVRARSLRMSEGGQAGQSKLMQRRHQEFRPSKSSERRNPSTGSLNEREERHKADKMPE*

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTTGTCTCTGAAGGGCGCAGCAGAGAAGGATATGCAGCTATTAGGATTCAGACAGCGTTCAGAGGATACCTGGCATTGGTTCGTGGACATATCGTGAGAAAGCAAGCAACCGAAACACTGAGGTGTATGCAATCCCTTGTTACGATCCAGGCTAGAGTTCGTGCTCGTAGTCTTCGAATGTCTGAAGGAGGGCAGGCAGGTCAGAGTAAACTTATGCAGAGACGCCACCAGGAATTTCGTCCAAGTAAATCAAGTGAAAGAAGGAACCCAAGCACTGGTAGTTTGAATGAAAGGGAGGAAAGGCACAAAGCAGACAAGATGCCAGAGTGAGATC

Fln Alignment:

sp_v1.1_unigene74550___RSREGYAAIRIQTAFRGYLA---------------LVRGHIVRKQATETLRCMQSLVTIQARVRARSLRMSEGGQAGQSKLMQRRHQEFRPSKSSERRNPSTGSLNEREERHK
B8LKS1_______________RIREESAAIKAQTAFRGYLARRAFRALRGLIRLQALVRGHMVRRQAAGSLRCLQAIIRLQALVRAHQVRMSEQGLAVQERLEYRRRQNPSRGNELERKSSSIFVVNSASRSEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain