SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene74478

Length: 381 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene74478
CGTCGTGACCTTGGCTTTCACTCAGGTCGAGTCAAGAGGAAGAGGATCAAGACGCATCTAAATCATTGAAAACTAAAGATTCTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATATGGCCAGGTATAAAAGTGAAGCGATCAAAATCCAAGCCTGGGAAAGTCACCAGAAAGCAAAAGCAGAATTTGAAATGAGGAGAATAGAGAAAAATCCACCTGGCACTTCCCCTCATTCCAAAGATGGTATCTAGGGTAAACTGGATTATGCAGGAGCTTGAGGCTTTGTCAACATAAGGTTTAAGGCCATTACAACAATATACTCATTATCATTAAAAGCTTAACATG

Ace file of the UniGene sp_v1.1_unigene74478

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RY40_RICCO	-	-	2.0e-20	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	remorin family protein	-	-	3.26946e-20	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.26946e-20	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADM1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 24 aas, your sequence is shorter than subject: 95 - 429

Fln protein: S*PWLSLRSSQEEEDQDASKSLKTKDSEEAKKNIWGFRAAAWEDAEQAKYMARYKSEAIKIQAWESHQKAKAEFEMRRIEKNPPGTSPHSKDGI*

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTTTCACTCAGGTCGAGTCAAGAGGAAGAGGATCAAGACGCATCTAAATCATTGAAAACTAAAGATTCTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATATGGCCAGGTATAAAAGTGAAGCGATCAAAATCCAAGCCTGGGAAAGTCACCAGAAAGCAAAAGCAGAATTTGAAATGAGGAGAATAGAGAAAAATCCACCTGGCACTTCCCCTCATTCCAAAGATGGTATCTAGGGTAAACTGGATTATGCAGGAGCTTGAGGCTTTGTCAACATAAGGTTTAAGGCCATTACAACAATATACTCATTATCATTAAAAGCTTAACATG

Fln Alignment:

sp_v1.1_unigene74478___LSLRSSQEEEDQDASKSLKTKDSEEAKKNIWGFRAAAWEDAEQAKYMARYKSEAIKIQAWESHQKAKAEFEMRRIE
D5ADM1_______________VSTWSSREEEEEDVSKSLRHFDMGDCKKSIVEIRAAAWEEAERSKCFTRYQREEARIEAWINLQGAKAEAETKKLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain