SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene74443

Length: 302 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene74443
CGTCGTGACCTTGGCTGTCACTCATTTTACATACCCTCTTTCAAGATTTATAGAGGTGTTGCTGGGTTGTATGATTATGGGCCTCCGGGCTGTGCCATCAAGGCTAATGTCTTGCCTTTGGCGTCATCATATGTCTTAGAAGAGAACATGTTGGAGGTTGATTGCCCATGTGTCACGCCTGAAGTTGTCCTGAAAGCATCTGGGCATGTAGACAAGTTCACAGATCTGATGGTGAAAGATGAGAAAACCGGATGTGTTATCGGGCAGATCACTTGCTTAAAGATTACTGCAAAGCAAGCTTG

Ace file of the UniGene sp_v1.1_unigene74443

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycyl-tRNA synthetase, putative (EC:6.1.1.14); K01880 glycyl-tRNA synthetase [EC:6.1.1.14]	-	-	8.0e-36	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	glycyl-trna synthetase	-	-	3.97276e-38	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	3.97276e-38	90%

Source	ECs	Term	Type	e value	Identity
AutoFact	Glycine--tRNA ligase.	EC:6.1.1.14	-	8.0e-36	85%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Aminoacyl-tRNA biosynthesis	00970		8.0e-36	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	3.97276e-38	90%
Blast2go	translation	GO:0006412	Biological Process	3.97276e-38	90%
Blast2go	ligase activity	GO:0016874	Molecular Function	3.97276e-38	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.97276e-38	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	3.97276e-38	90%
Blast2go	Glycyl-tRNA synthetase, alpha2 dimer	IPR002315	-	3.97276e-38	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRG7

Fln msg: Distance to subject end: 507 aas, your sequence is shorter than subject: 100 - 740

Fln protein: RRDLGCHSFYIPSFKIYRGVAGLYDYGPPGCAIKANVLPLASSYVLEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTGCVIGQITCLKITAKQA

Protein Length: 101

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTACATACCCTCTTTCAAGATTTATAGAGGTGTTGCTGGGTTGTATGATTATGGGCCTCCGGGCTGTGCCATCAAGGCTAATGTCTTGCCTTTGGCGTCATCATATGTCTTAGAAGAGAACATGTTGGAGGTTGATTGCCCATGTGTCACGCCTGAAGTTGTCCTGAAAGCATCTGGGCATGTAGACAAGTTCACAGATCTGATGGTGAAAGATGAGAAAACCGGATGTGTTATCGGGCAGATCACTTGCTTAAAGATTACTGCAAAGCAAGCTTG

Fln Alignment:

sp_v1.1_unigene74443___FYIPSFKIYRGVAGLYDYGPPGCAIKANVLPL-ASSYVLEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTG
C0PRG7_______________FYIPSFKIYRGVAGLYDYGPPGCAVKANVIAFWRQHYVLEENMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDEKTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain