SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene74270

Length: 384 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene74270
CGTCGTGACCTTGGCTGTCACTCAACAAGTGGGAGATTTTATCTTGATTAGATACTCTGATTCAAACTTTGATGGAGATAAATAAAATGGGGCATCTACTTCAGGTTAGGCTATGCATCTTGGATTAGGAGTTGTCTCCTGGAGGTCACGCAAACAATCATTTCCAGCAGATTCCACAATAGAGGCATAATATGTGGAGAAACTGAAGCAACAAAGCCAATTGTGTGGGTAAGGAAAATTATGGAAGATTTGTAGGAGAAACAAGTGCATTAAACTCCTCTCATAATTGACAACACTTCTGCAATAAAGTTGGCCGGCAAAAAAAAGTTCCATGATCAAACAAAGCATATCAATACAAAAATACCACCTAATTCGACATCATGT

Ace file of the UniGene sp_v1.1_unigene74270

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ	-	-	9.0e-12	45%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	38%
Blast2go	retrotransposon unclassified	-	-	1.73054e-11	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P10978

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 40 aas, your sequence is shorter than subject: 63 - 1328

Fln protein: VVTLAVTQQVGDFILIRYSDSNFDGDK*NGASTSG*AMHLGLGVVSWRSRKQSFPADSTIEA*

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACAAGTGGGAGATTTTATCTTGATTAGATACTCTGATTCAAACTTTGATGGAGATAAATAAAATGGGGCATCTACTTCAGGTTAGGCTATGCATCTTGGATTAGGAGTTGTCTCCTGGAGGTCACGCAAACAATCATTTCCAGCAGATTCCACAATAGAGGCATAATATGTGGAGAAACTGAAGCAACAAAGCCAATTGTGTGGGTAAGGAAAATTATGGAAGATTTGTAGGAGAAACAAGTGCATTAAACTCCTCTCATAATTGACAACACTTCTGCAATAAAGTTGGCCGGCAAAAAAAAGTTCCATGATCAAACAAAGCATATCAATACAAAAATACCACCTAATTCGACATCATGT

Fln Alignment:

sp_v1.1_unigene74270___DFILIRYSDSNFDGDK*NGASTSG*AMHLGLGVVSWRSRKQSFPADSTIEA*YV
P10978_______________DPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain