SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene74131

Length: 315 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene74131
CGTCGTGACCTTGGCTTCACTCAGTGGATCTATTGCGTTGGGGAAGACAGAAATATCTACTTCTTGAGTTGGCTGTCTTGGAAGCTTGAACATCTTATGAAGGCACATGACAAGGACATAATTGGTGTAACACCTCATCCACATAGGAATTTGTTGGTAACATATAGTGAAGATAGCACAATGAAGATATGGAAACCCTAATATGGATTTTATACTGCTATTGGATTTGTATAGAAATAATAATTTTTTGAATTTTGATGGTAGCGTATGGTTGAAGGAAAACTTGGATATATCATGTACACATTTTTCTCCATA

Ace file of the UniGene sp_v1.1_unigene74131

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transducin family protein / WD-40 repeat family protein; K13111 WD40 repeat-containing protein SMU1	-	-	5.0e-18	63%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	79%
Blast2go	protein	-	-	2.7187e-22	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	2.7187e-22	80%
Blast2go	nucleus	GO:0005634	Cellular Component	2.7187e-22	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9I0X0

Fln msg: your sequence is shorter than subject: 67 - 512

Fln protein: RRDLGFTQWIYCVGEDRNIYFLSWLSWKLEHLMKAHDKDIIGVTPHPHRNLLVTYSEDSTMKIWKP*

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTTCACTCAGTGGATCTATTGCGTTGGGGAAGACAGAAATATCTACTTCTTGAGTTGGCTGTCTTGGAAGCTTGAACATCTTATGAAGGCACATGACAAGGACATAATTGGTGTAACACCTCATCCACATAGGAATTTGTTGGTAACATATAGTGAAGATAGCACAATGAAGATATGGAAACCCTAA___TATGGATTTTATACTGCTATTGGATTTGTATAGAAATAATAATTTTTTGAATTTTGATGGTAGCGTATGGTTGAAGGAAAACTTGGATATATCATGTACACATTTTTCTCCATA

Fln Alignment:

sp_v1.1_unigene74131___QWIYCVGEDRNIYFLSWLSWKLEHLMKAHDKDIIGVTPHPHRNLLVTYSEDSTMKIWKP
B9I0X0_______________EWIYCVGEDRNIYCFSYQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYSEDSTMKLWKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain