SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene73994

Length: 522 nt

UniGene Fasta

>sp_v1.1_unigene73994
CGTCGTGACCTTGGCTGTCACTCATCTATTAACCTTGTGGTGGAGTGTTTTGATTCTATAGGGAAGCTTCCCATGGCATTTTAGGAGTTGGCCTAAAGAGCGGGGACCCTTGTTGAGTACTATGAAGAACTTAAAAGATCGGGTATCCCATCATCAAAACATGTATATATGGCACTTATCCATGTCTTTGTGAACTTCGGCAATTTCCTTAAAGCAAAGGAGATAGTCGAGGATAAAAGAAAACATGAAAAGTACTTAACTGAGATTAAAAGTTACTTTATAGTAGCACTCATGTCAAATGGAAGAGTATCAGAAGCATTTGAAATATATGATGAAATAAAGCAAGCAGGTGACGTTCCCGAGGCAAAAAGCGATGAGGTCCCTTATTGTGAGAGCCTCTTGGGAAGCAAGGTAAATTCACTGAAATGTTTCAGTTGCTTCATGAGTACAAAGATAAGGAGGATTGGTGCTACGCTTGTAGTTTATCAGTGCTCTCCTGCATTAAGCATAACAGCTTAGCTC

Ace file of the UniGene sp_v1.1_unigene73994

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6Z6J3_ORYSJ	-	-	5.0e-19	48%
FL-Next	sp=Pentatricopeptide repeat-containing protein At4g21880, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%
Blast2go	pentatricopeptide repeat-containing protein	-	-	7.90908e-19	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	7.90908e-19	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O49711

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 157 aas, your sequence is shorter than subject: 173 - 843

Fln protein: RRDLGCHSSINLVVECFDSIGKLPMAF*ELA*RAGTLVEYYEELKRSGIPSSKHVYMALIHVFVNFGNFLKAKEIVEDKRKHEKYLTEIKSYFIVALMSNGRVSEAFEIYDEIKQAGDVPEAKSDEVPYCESLLGSKVNSLKCFSCFMSTKIRRIGATLVVYQCSPALSITA*

Protein Length: 174

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTATTAACCTTGTGGTGGAGTGTTTTGATTCTATAGGGAAGCTTCCCATGGCATTTTAGGAGTTGGCCTAAAGAGCGGGGACCCTTGTTGAGTACTATGAAGAACTTAAAAGATCGGGTATCCCATCATCAAAACATGTATATATGGCACTTATCCATGTCTTTGTGAACTTCGGCAATTTCCTTAAAGCAAAGGAGATAGTCGAGGATAAAAGAAAACATGAAAAGTACTTAACTGAGATTAAAAGTTACTTTATAGTAGCACTCATGTCAAATGGAAGAGTATCAGAAGCATTTGAAATATATGATGAAATAAAGCAAGCAGGTGACGTTCCCGAGGCAAAAAGCGATGAGGTCCCTTATTGTGAGAGCCTCTTGGGAAGCAAGGTAAATTCACTGAAATGTTTCAGTTGCTTCATGAGTACAAAGATAAGGAGGATTGGTGCTACGCTTGTAGTTTATCAGTGCTCTCCTGCATTAAGCATAACAGCTTAGCTC

Fln Alignment:

sp_v1.1_unigene73994___TLVEYYEELKRSGIPSSKHVYMALIHVFVNFGNFLKAKEIVEDKRKHEKYLTEIKSYFIVALMSNGRVSEAFEIYDEIKQ
O49711_______________TIAKYYKEMKQAGVEVNKHVYMSLVKAYASCGQFEKAKQVLMDLEVPAKDHNELKSVLISALASNGNITEALSIYEEMKK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain