SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene73989

Length: 365 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene73989
CGTCGTGACCTTGGCTGTCACTCAGGTTTTTTGTCAAATGATAACAAATGAGTTTCTGACTGTAACATCTCAACTCAGGATTAATAAACTGTCTGGTTGGACATGCTCTTTTGTATTGCAGGTTTCTGTGGAAGGTGTGGGATACCACAAGGCATGCTTCAAGTGTATGCATGGTGGTTGTGTTATCAGTCCCTCGAACTATATTGCAATTGAGGGCAGGCTTTATTGCAAACATCACCATGCTCAGCTCTTCAAAGAAAAGGGCAATTATAGCCAACTTATCAAAACTCCATCTGTCAAAGAAGTATCAGAGAATTCAGTACACGAGTGATTATGCAGCTGAAGTTTGACAAAATTATCTTTGG

Ace file of the UniGene sp_v1.1_unigene73989

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LIM domain protein PLIM1 [Nicotiana tabacum]	-	-	6.0e-22	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	protein	-	-	2.38934e-31	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, LIM-type	IPR001781	-	2.38934e-31	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNM5

Fln msg: your sequence is shorter than subject: 98 - 187

Fln protein: MITNEFLTVTSQLRINKLSGWTCSFVLQVSVEGVGYHKACFKCMHGGCVISPSNYIAIEGRLYCKHHHAQLFKEKGNYSQLIKTPSVKEVSENSVHE*

Protein Length: 99

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTTTTGTCAA_-_ATGATAACAAATGAGTTTCTGACTGTAACATCTCAACTCAGGATTAATAAACTGTCTGGTTGGACATGCTCTTTTGTATTGCAGGTTTCTGTGGAAGGTGTGGGATACCACAAGGCATGCTTCAAGTGTATGCATGGTGGTTGTGTTATCAGTCCCTCGAACTATATTGCAATTGAGGGCAGGCTTTATTGCAAACATCACCATGCTCAGCTCTTCAAAGAAAAGGGCAATTATAGCCAACTTATCAAAACTCCATCTGTCAAAGAAGTATCAGAGAATTCAGTACACGAGTGA___TTATGCAGCTGAAGTTTGACAAAATTATCTTTGG

Fln Alignment:

sp_v1.1_unigene73989___TCSFVLQVSVEGVGYHKACFKCMHGGCVISPSNYIAIEGRLYCKHHHAQLFKEKGN
A9NNM5_______________TVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain