SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene73964

Length: 379 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene73964
CGTCGTGACCTTGGCTGTCACTCAACATTCCTTGTGGTTATGCTGTCTAAGACTAAAGCAACAACGGCTGGTGCCTCATCGACACAGGCCCAACCATCTGTTTCTGCATCTCCAGCCCAGAACCCTGTAGCACCGGTGCCGTCTGCCTTGGCTGTCACTCACCTCAGGCTCCTGCAACTACTACGCCTGCCATTGGCGCTGGAGCAACGCCTGCCATTGGCACTGGAACAACGCAGACAGATGTAGATGCAGATGCATATGGACAAGCAGCATCAAATTTAGTTGCAGGAAATAACCTTGAACATGTTATTCAACAAATTCTTGACATGGGTGGTGGTAGCTGGGATAGAGATACAGTTGTTCGTGCCTTACGTGCAGC

Ace file of the UniGene sp_v1.1_unigene73964

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uv excision repair protein rad23, putative; K10839 UV excision repair protein RAD23	-	-	7.0e-14	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	uv excision repair protein	-	-	2.34016e-20	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	2.34016e-20	90%
Blast2go	proteasome binding	GO:0070628	Molecular Function	2.34016e-20	90%
Blast2go	ubiquitin binding	GO:0043130	Molecular Function	2.34016e-20	90%
Blast2go	nucleus	GO:0005634	Cellular Component	2.34016e-20	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQD9

Fln msg: Separated hits, possible frame ERROR between 153 and 246, Distance to subject end: 225 aas, your sequence is shorter than subject: 126 - 403

Fln protein: RRDLGCHSTFLVVMLSKTKATTAGASSTQAQPSVSASPAQNPVAPVPSALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDADAYGQAASNLVAGNNLEHVIQQILDMGGGSWDRDTVVRALRA

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATTCCTTGTGGTTATGCTGTCTAAGACTAAAGCAACAACGGCTGGTGCCTCATCGACACAGGCCCAACCATCTGTTTCTGCATCTCCAGCCCAGAACCCTGTAGCACCGGTGCCGTCTGCCTTGGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGATGCAGATGCATATGGACAAGCAGCATCAAATTTAGTTGCAGGAAATAACCTTGAACATGTTATTCAACAAATTCTTGACATGGGTGGTGGTAGCTGGGATAGAGATACAGTTGTTCGTGCCTTACGTGCAGC

Fln Alignment:

sp_v1.1_unigene73964___STFLVVMLXXXXXXXXXXXXXXXXXX-VSASPAQNPVAPVPSALAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDADAYGQAASNLVAGNNLEHVIQQILDMGGGSWDRDTVVRALRA
C0PQD9_______________NTFLVVMLSKTKATTAGTSSTQQAPPSVSPAPAQNPVAPVPAAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDADVYGQAASNLVAGNNLEHVIQQILDMGGGSWDRDTVVRALRA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain