SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene73529

Length: 405 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene73529
CGTCGTGACCTTGGCTGTCACTCATGTTGAAGAGAAAGGGGAGGAAAAGTGGCGGCTTTGAAGAATGAGGGTAAAAGTATGATGGATAGCGTTGTGATGTTGGCTGTGACTGTGAGATTGAGGATGAAGATGTGGCCCAGGGGAAAACCAATTCTGCTCCAAAGAAGAAAGGATGGTTTTCTTCAATCTTCCAAAGTGTTGCAGGAAAATCAGTTCTTGAAAAATCAGACTTGGAGCCAGCTCTGAAAGCACTCAAGGATCGATTTATGACGAAGAATGTGGCAGAGGAGATTGCTGAAAAGCTTTGCGAATCAGTAGCAGCTAGTCTTGAAGGCAAAAAGTTGGGTTCTTTCACAAGAGTTTCTACTACTGTACAGGCAGCAATGGAAGAAGCTCTTCTTCGAA

Ace file of the UniGene sp_v1.1_unigene73529

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Signal recognition particle receptor alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9STS5_RICCO	-	-	3.0e-35	76%
FL-Next	tr=Signal recognition particle receptor alpha subunit, putative; Ricinus communis (Castor bean).	-	-	0.0	76%
Blast2go	protein	-	-	6.13902e-35	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	6.13902e-35	85%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	6.13902e-35	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9STS5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 229 aas, your sequence is shorter than subject: 134 - 618

Fln protein: S*PWLSLMLKRKGRKSGGFEE*G*KYDG*RCDVGCDCEIEDEDVAQGKTNSAPKKKGWFSSIFQSVAGKSVLEKSDLEPALKALKDRFMTKNVAEEIAEKLCESVAASLEGKKLGSFTRVSTTVQAAMEEALLR

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTGAAGAGAAAGGGGAGGAAAAGTGGCGGCTTTGAAGAATGAGGGTAAAAGTATGATGGATAGCGTTGTGATGTTGGCTGTGACTGTGAGATTGAGGATGAAGATGTGGCCCAGGGGAAAACCAATTCTGCTCCAAAGAAGAAAGGATGGTTTTCTTCAATCTTCCAAAGTGTTGCAGGAAAATCAGTTCTTGAAAAATCAGACTTGGAGCCAGCTCTGAAAGCACTCAAGGATCGATTTATGACGAAGAATGTGGCAGAGGAGATTGCTGAAAAGCTTTGCGAATCAGTAGCAGCTAGTCTTGAAGGCAAAAAGTTGGGTTCTTTCACAAGAGTTTCTACTACTGTACAGGCAGCAATGGAAGAAGCTCTTCTTCGAA

Fln Alignment:

sp_v1.1_unigene73529___VGCDCEIEDEDVAQGKTNSAPKKKGWFSSIFQSVAGKSVLEKSDLEPALKALKDRFMTKNVAEEIAEKLCESVAASLEGKKLGSFTRVSTTVQAAMEEALLR
B9STS5_______________ISSDSESEDEEVGK-ESKPGAKKKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVQAAMEEALVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain