SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene73520

Length: 445 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene73520
CGTCGTGACCTTGGCTGTCACTCAAGTGTTTCACAATTTTGATAAGCTGATTCTTCTCTCAGAAGGCCATCTAATTTACTATGGAAAGGCAGCAGCCGCTTTGGACCACTTCTCATGTCTAGGCTTCAATCCCCACATAGCCATGAATCCTGCAGATTTTCTCCTAGACCTTTGTAGCGGGATTACAGAGGAGATCTCTCTGCCTCCAGAATTGCAGTTAGATACAGTTAAGACGAAAGACATTCGGCAGCACATGATAAATGGCTACGAATCTTTGAGGCGAAGCATGGTCGAGGTAACAAATCCTGAGTCCAATGAGCTTAGAAAAAATGTAAAGCAATGTGAAGATAGGAGACAGTGGGGAGCATCTTGGTGGGAACAATTCTCTGTCCTCCTGATCCGGGGATTGAAGAGAGGCGTCATGAGTACCTAAGCTGGACCCGAT

Ace file of the UniGene sp_v1.1_unigene73520

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative (EC:3.6.3.29)	-	-	5.0e-27	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	abc transporter family protein	-	-	4.66567e-29	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.66567e-29	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 247 aas, your sequence is shorter than subject: 144 - 819

Fln protein: VVTLAVTQVFHNFDKLILLSEGHLIYYGKAAAALDHFSCLGFNPHIAMNPADFLLDLCSGITEEISLPPELQLDTVKTKDIRQHMINGYESLRRSMVEVTNPESNELRKNVKQCEDRRQWGASWWEQFSVLLIRGLKRGVMST*

Protein Length: 145

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTGTTTCACAATTTTGATAAGCTGATTCTTCTCTCAGAAGGCCATCTAATTTACTATGGAAAGGCAGCAGCCGCTTTGGACCACTTCTCATGTCTAGGCTTCAATCCCCACATAGCCATGAATCCTGCAGATTTTCTCCTAGACCTTTGTAGCGGGATTACAGAGGAGATCTCTCTGCCTCCAGAATTGCAGTTAGATACAGTTAAGACGAAAGACATTCGGCAGCACATGATAAATGGCTACGAATCTTTGAGGCGAAGCATGGTCGAGGTAACAAATCCTGAGTCCAATGAGCTTAGAAAAAATGTAAAGCAATGTGAAGATAGGAGACAGTGGGGAGCATCTTGGTGGGAACAATTCTCTGTCCTCCTGATCCGGGGATTGAAGAGAGGCGTCATGAGTACCTAAGCTGGACCCGAT

Fln Alignment:

sp_v1.1_unigene73520___TQVFHNFDKLILLSEGHLIYYGKAAAALDHFSCLGFNPHIAMNPADFLLDLCSGITEEISLPPELQLD---------------TVKTKDIRQHMINGYES----LRRSMVEVTNPESNELRKNVKQCEDRRQWGASWWEQFSVLLIRGLK
B8LNF9_______________SRLFHKFDKLILLGEGHSIYFGKASDAMEYFSSVGFSPFLAMNPADFLLDLANGNIHDISVPAELENTSHAEAEDNHGDKFPRSLSSHDVLEYLIEAYETNVAPMEKAKLITLNEVTDDLKSSVSA---KREWGATWWDQFSILFVRGLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain