SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene73431

Length: 372 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene73431
GATCCTAGACATAAAGATGAATTAGGCAAGATTGTTTCTAACTATTATGAAGTGTTTCAAGAACCTAAAGATTTACCTTCCAAGAGAGAGATACAACCTGAAATCCAATTGCAGCAAGATGCTCCTCTTCCTAACATTGGTATGTATAGGTTATGAGTGATTGAGAATGGAGAAATCAAGAAGCAAGTCCAAAAGTTGCTCAAGAAAGGAGTCATCCAACCAAGTACTTCCATACAGATCTTCTATTGTACTGGTACCAAAGAAAGATGGTACGTGGAAAATGCATGTGGATTTTCAAGAATTGAACAAATCATGGTGAAGAATCGTTACCATCTTTCTCATATTGATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene73431 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q60E20_ORYSJ	-	-	4.0e-07	41%
FL-Next	tr=Putative uncharacterized protein; Lotus japonicus.	-	-	0.0	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B5U9W4

Fln msg: Separated hits, possible frame ERROR between 150 and 230, Unexpected STOP codon at 3' end. Distance to subject end: 851 aas, your sequence is shorter than subject: 107 - 1558

Fln protein: DPRHKDELGKIVSNYYEVFQEPKDLPSKREIQPEIQLQQDAPLPNIGMYxxxxxxxxxxxxxxxxxxxxxxxxxxxxPYRSSIVLVPKKDGTWKMHVDFQELNKSW*

Protein Length: 108

Fln nts: GATCCTAGACATAAAGATGAATTAGGCAAGATTGTTTCTAACTATTATGAAGTGTTTCAAGAACCTAAAGATTTACCTTCCAAGAGAGAGATACAACCTGAAATCCAATTGCAGCAAGATGCTCCTCTTCCTAACATTGGTATGTATAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCATACAGATCTTCTATTGTACTGGTACCAAAGAAAGATGGTACGTGGAAAATGCATGTGGATTTTCAAGAATTGAACAAATCATGGTGAAGAATCGTTACCATCTTTCTCATATTGATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene73431___KIVSNYYEVFQEPKDLPSKREIQPEIQLQQDAPLPNIGMYRxxxxxxxxxxxxxxxxxxxxxxxxxxxPYRSSIVLVPKKDGTWKMHVDFQELNKS
B5U9W4_______________KILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRxxxxxxxxxxxxxxxxxxxxxxxxxxxPFSSPAILVKKKDGGWRFCVDYRALNKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain