SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene73424

Length: 390 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene73424
CGTCGTGACCTTGGCTGTCACTCAGACAGGCGGGTTCGGATCAGTGTACGAAGGCGTTTTGAAGGACAAAACCAGAGTTGCTGTCAAGAAGTTGGACGGGCCGAGACAGGGCTACAAGGAATTCAGAGCCGAAGTAGCGACGATCGGCAGCATAAGCCACATGAATCTAGTCAGGCTACGGGGTTTCTGCGCCGATTCCCGCCAGAGGCTCCTAGTTTACGAGCTCATGGAGAACGGTTCTTTGGATAAATGGCTATACTCTGGTCGGGACGGCAGCAAAGGGTGTTTGACATGGGAACAGCGTTACAATGTGGCTGTGGGAACTGCTCGTGGCCTGACGTATCTGCACGAACAGTGCAGAGAATCCATCATGCACTTGGACATAAAGCC

Ace file of the UniGene sp_v1.1_unigene73424

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinase-like protein (Fragment) n=1 Tax=Corylus avellana RepID=C7A7W5_CORAV	-	-	9.0e-38	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	protein	-	-	1.70434e-37	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	1.70434e-37	76%
Blast2go	protein binding	GO:0005515	Molecular Function	1.70434e-37	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.70434e-37	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.70434e-37	76%
Blast2go	Protein kinase-like domain	IPR011009	-	1.70434e-37	76%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	1.70434e-37	76%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	1.70434e-37	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 129 - 431

Fln protein: VVTLAVTQTGGFGSVYEGVLKDKTRVAVKKLDGPRQGYKEFRAEVATIGSISHMNLVRLRGFCADSRQRLLVYELMENGSLDKWLYSGRDGSKGCLTWEQRYNVAVGTARGLTYLHEQCRESIMHLDIK

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACAGGCGGGTTCGGATCAGTGTACGAAGGCGTTTTGAAGGACAAAACCAGAGTTGCTGTCAAGAAGTTGGACGGGCCGAGACAGGGCTACAAGGAATTCAGAGCCGAAGTAGCGACGATCGGCAGCATAAGCCACATGAATCTAGTCAGGCTACGGGGTTTCTGCGCCGATTCCCGCCAGAGGCTCCTAGTTTACGAGCTCATGGAGAACGGTTCTTTGGATAAATGGCTATACTCTGGTCGGGACGGCAGCAAAGGGTGTTTGACATGGGAACAGCGTTACAATGTGGCTGTGGGAACTGCTCGTGGCCTGACGTATCTGCACGAACAGTGCAGAGAATCCATCATGCACTTGGACATAAAGCC

Fln Alignment:

sp_v1.1_unigene73424___GGFGSVYEGVLKDKTRVAVKKL-DGPRQGYKEFRAEVATIGSISHMNLVRLRGFCADSRQRLLVYELMENGSLDKWLYSGRDGSKGCLTWEQRYNVAVGTARGLTYLHEQCRESIMHLDIK
A9NM60_______________GGFGTVYEGILEDDTLVAVKCLVNESRQGQAEFCAEIGTTSSINHSNLVRLHGICVEGQHRILVYEFMANGSLDRWLFD----SDKWLDWKTRYSIALDTARGLAYLHEESRLCILHLDVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain