SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene73052

Length: 428 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene73052
CGTCGTGACCTTGGCTGTCACTCAGCAGGCCCTCTTCCTGTAGATTTGGGGAAGCATCTGGGTTCCTTGGAATGGCTGGCTCTGGATTGGAATGATTTGGAAGGGGGCATTCCTTCGTCTCTGGCGAACTGTTCGAATTTGGTGGTGCTGAGCATGGAATATAACAGGCTGACTGGGCAACTTCCTGCTGCAATCGGGGCGCTTCCGAAACTGGAGACACTATCTTTAAGTGGGAATAACTTATCGGGTCCGGTTCCATTTTCCATCTTCAACAGTTCCTCCCTGCGGGTACTTCAACTGGGTTTCAATCGATTCTCTGCTTTACCTGCCAGTGCCGGCGCTTCGAGCTTGAGATTGAAGATACTGGATCTCCAGAGCAACATAATCACGGGTTCCATACCGGAGTTTGTTGGCAATCTCTCCGATCT

Ace file of the UniGene sp_v1.1_unigene73052

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor protein kinase [Arabidopsis thaliana] emb\|CAB81527.1\| putative receptor protein kinase [Arabidopsis thaliana]	-	-	8.0e-25	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	receptor protein kinase	-	-	1.52041e-25	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.52041e-25	63%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.52041e-25	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	1.52041e-25	63%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	1.52041e-25	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 514 aas, your sequence is shorter than subject: 142 - 818

Fln protein: RRDLGCHSAGPLPVDLGKHLGSLEWLALDWNDLEGGIPSSLANCSNLVVLSMEYNRLTGQLPAAIGALPKLETLSLSGNNLSGPVPFSIFNSSSLRVLQLGFNRFSALPASAGASSLRLKILDLQSNIITGSIPEFVGNLSD

Protein Length: 143

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCAGGCCCTCTTCCTGTAGATTTGGGGAAGCATCTGGGTTCCTTGGAATGGCTGGCTCTGGATTGGAATGATTTGGAAGGGGGCATTCCTTCGTCTCTGGCGAACTGTTCGAATTTGGTGGTGCTGAGCATGGAATATAACAGGCTGACTGGGCAACTTCCTGCTGCAATCGGGGCGCTTCCGAAACTGGAGACACTATCTTTAAGTGGGAATAACTTATCGGGTCCGGTTCCATTTTCCATCTTCAACAGTTCCTCCCTGCGGGTACTTCAACTGGGTTTCAATCGATTCTCTGCTTTACCTGCCAGTGCCGGCGCTTCGAGCTTGAGATTGAAGATACTGGATCTCCAGAGCAACATAATCACGGGTTCCATACCGGAGTTTGTTGGCAATCTCTCCGATCT

Fln Alignment:

sp_v1.1_unigene73052___GCHSAGPLPVDLGKHLGSLEWLALDWNDLEGGIPSSLANCSNLVVLSMEYNRLTGQLPAAIGALPKLETLSLSGNNLSGPVPFSIFNSSSLRVLQLGFNRFXXXXXXXXXXXXXXKILDLQSNIITGSIPEFVGNLSD
B8LQX6_______________GNNLTGTIPPEFGQ-LKSLGILDLRFNFLRGFIPKALCNCTRLQWIRLSYNSLTGSIPTEFGRLVKLEQLRLRNNNLSGSIPTSLSNCTSLQGLSIGYNSLTGPIPSVLSLIRNLSLLYFEGNSLSGHIPSSLCNCTE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain