SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene72877

Length: 348 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene72877
CGTCGTGACCTTGGCTGTCACTCAATTTTTTTCCCAAACAAATAATCACAGCAGGTGGTCTTATTACAGGATGGGGCGACCACCGGTAAGCGGAGCTCCTGTTTTTCGCTTCTTTCCCAAAGAGGTCCAAGAAATGGAAAAGTTCTTAGAAGATGGCAAGGCTTTCATTCCTCCACGCGATACAATCTCTTCACTTGCAGAGAAGTTCAGTGCAGCACCAGAAAGGGCTGGGAAAACTCTTGTGCAATGGAAGCAGGTATGGACTTGGTTTCAGAATAGGAGTATGCACAAAAAGCAAAGGGTACCAAGGTTCCAGGAAAAACNGTAGCTTCACATCGTGATGATTCA

Ace file of the UniGene sp_v1.1_unigene72877

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RX94_RICCO	-	-	3.0e-16	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	sequence-specific dna binding transcription factor	-	-	1.64966e-36	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACD8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 142 aas, your sequence is shorter than subject: 86 - 236

Fln protein: MGRPPVSGAPVFRFFPKEVQEMEKFLEDGKAFIPPRDTISSLAEKFSAAPERAGKTLVQWKQVWTWFQNRSMHKKQRVPRFQEKQ*

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTTCCCAAACAAATAATCACAGCAGGTGGTCTTATTACAGG_-_ATGGGGCGACCACCGGTAAGCGGAGCTCCTGTTTTTCGCTTCTTTCCCAAAGAGGTCCAAGAAATGGAAAAGTTCTTAGAAGATGGCAAGGCTTTCATTCCTCCACGCGATACAATCTCTTCACTTGCAGAGAAGTTCAGTGCAGCACCAGAAAGGGCTGGGAAAACTCTTGTGCAATGGAAGCAGGTATGGACTTGGTTTCAGAATAGGAGTATGCACAAAAAGCAAAGGGTACCAAGGTTCCAGGAAAAACaGTAGCTTCACATCGTGATGATTCA

Fln Alignment:

sp_v1.1_unigene72877___MGRPPVSGAPVFRFFPKEVQEMEKFLEDGKAFIPPRDTISSLAEKFSAAPERAGKTLVQWKQVWTWFQNRSMHKKQR
D5ACD8_______________MGRPPASGAPVFRFFPQEVQEMEKFLEDGKGAVPPRDTISSLAEKFSAAPERAGKILVQWKQVWTWFQNRRHAQKAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain