SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene72808

Length: 439 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene72808
CGTCGTGACCTTGGCTGTCACTCAATGGAAAAGATATGGTAACAAGATGACAATCTAATAGCCCATAAAATCTTCTTAGGAGAAAATAAGATAGGGGATGTATAGTTAGAAGTAAAGGAATAATAATGTCAACTGGAACAGAATTTGTAGGCATACAAAGAAGTGTTCCAAGAGCCTAAAATGTTACCATATAAGAGGGATGTCGAGCATGAGATATAGTTATATTCTAAATCCCTATTGCCAAGCATTGGGTTGTATATCCAATCCATCCTAGAAGAAAATAATGTGAAGAAATAGTTTCAATGATTATGGTTGTAGAAAATAATATGACCAAGCACCTCACCTTGTGGGTGGCTTATCATCATTGTACTTAAGAATGATTGGACTTAGAGAATGTGTATTGAATACAAAGCTCTGAATAATATCACCATCATCCATG

Ace file of the UniGene sp_v1.1_unigene72808

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH	-	-	2.0e-07	36%
FL-Next	tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus).	-	-	0.0	47%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: Q2AA41

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 261 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 57 - 335

Fln protein: LYSKSLLPSIGLYIQSILEENNVKK*FQ*LWL*KII*PSTSPCGWLIIIVLKNDWT*

Protein Length: 58

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGAAAAGATATGGTAACAAGATGACAATCTAATAGCCCATAAAATCTTCTTAGGAGAAAATAAGATAGGGGATGTATAGTTAGAAGTAAAGGAATAATAATGTCAACTGGAACAGAATTTGTAGGCATACAAAGAAGTGTTCCAAGAGCCTAAAATGTTACCATATAAGAGGGATGTCGAGCATGAGATATAGTTATATTCTAAATCCCTATTGCCAAGCATTGGGTTGTATATCCAATCCATCCTAGAAGAAAATAATGTGAAGAAATAGTTTCAATGATTATGGTTGTAGAAAATAATATGACCAAGCACCTCACCTTGTGGGTGGCTTATCATCATTGTACTTAAGAATGATTGGACTTAGAGAATGTGTATTGAATACAAAGCTCTGAATAATATCACCATCATCCATG

Fln Alignment:

sp_v1.1_unigene72808___LYSKSLLPSIGLYIQSILEENNVKK*FQ*LWL*KII*PSTSPCGWLIIIVLKNDWT*RMCIEYKALNNITI
Q2AA41_______________LTDESSLPNIGLYRTSVQESEEIKKQVQELLEMGVIVPSCSPCGSSVLLVLKKDGGWLMCMDYRALNKITI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain