SustainPineDB

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Assembly info
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SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene72515

Length: 336 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene72515
CGTCGTGACCTTGGCTGTCACTCAATTATTCCCTATCTTCAGTCGGGTTTAAATGATCATTATGATGTGAAAATGCCATGCCACCTCATACTTTCAAAGCTTGCGGATAAGTGTGCTTCTGCAGTTCTGGCAGGTTTGCTGGTTTGCTTTCACTTATTGCTTTTTATGTTACAATAACCATGGATTGACATGTTCCTCAGGTTTAACTGACTGGGGCCTTATATGATGCAGTTCTTGATTCATTGGTAGAGCCCTTAGAAAAGACAATCACTCACAAACCAAAGCAGGATGCTGTGAAGCAAGAAGTAGATCGCAATGAAGATATGATTCGAAGTG

Ace file of the UniGene sp_v1.1_unigene72515

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CAND1; CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED); binding	-	-	1.0e-20	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	protein	-	-	8.41986e-28	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	8.41986e-28	94%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	8.41986e-28	94%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	8.41986e-28	94%
Blast2go	protein binding	GO:0005515	Molecular Function	8.41986e-28	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.41986e-28	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	8.41986e-28	94%
Blast2go	TATA-binding protein interacting (TIP20)	IPR013932	-	8.41986e-28	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LME2

Fln msg: Separated hits, possible frame ERROR between 126 and 228, Distance to subject end: 56 aas, your sequence is shorter than subject: 112 - 420

Fln protein: RRDLGCHSIIPYLQSGLNDHYDVKMPCHLILSKLADKCASAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVLDSLVEPLEKTITHKPKQDAVKQEVDRNEDMIRS

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTCCCTATCTTCAGTCGGGTTTAAATGATCATTATGATGTGAAAATGCCATGCCACCTCATACTTTCAAAGCTTGCGGATAAGTGTGCTTCTGCAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCAGTTCTTGATTCATTGGTAGAGCCCTTAGAAAAGACAATCACTCACAAACCAAAGCAGGATGCTGTGAAGCAAGAAGTAGATCGCAATGAAGATATGATTCGAAGTG

Fln Alignment:

sp_v1.1_unigene72515___IIPYLQSGLNDHYDVKMPCHLILSKLADKCASAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVLDSLVEPLEKTITHKPKQDAVKQEVDRNEDMIRS
B8LME2_______________IIPYLQSGLNDHYDVKMPCHLILSKLADKCASAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAVLDSLVEPLEKTITHKPKQDAVKQEVDRNEDMIRS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain