SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene72445

Length: 329 nt

UniGene Fasta

>sp_v1.1_unigene72445
CGTCGTGACCTTGGCTATCACTCAGCCATTTTGGGGCTAAAGCTGATTTGAAACATGAAGCTAAGCCTAAACTGCGTCATTGCACTGTTAGAGTGTAAAACTTATATAGATTGTGGAATGAGTGTGCTGCAGATGATGGACGAGGAAGCAAAAATTGAAGCAGAAGTAGCAGAGGTCCAAACATGGTGGAACTCAGAGCGATTTCGCCTCACACAGAGGCCATACACTGCAAAGGATGTAGTTCGTCTGAGAGGCACCATGCGCCAGAGCTATGCGTCCAATGAGCTGGCCAAAAAGCTATGGAGGACACTCAAAACCCACCAGGCAAA

Ace file of the UniGene sp_v1.1_unigene72445

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isocitrate lyase n=1 Tax=Pinus taeda RepID=Q41084_PINTA	-	-	8.0e-23	81%
FL-Next	sp=Isocitrate lyase; Pinus taeda (Loblolly pine).	-	-	0.0	100%
Blast2go	isocitrate lyase	-	-	1.56973e-22	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	1.56973e-22	93%
Blast2go	protein binding	GO:0005515	Molecular Function	1.56973e-22	93%
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.56973e-22	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Isocitrate lyase/phosphorylmutase	IPR000918	-	1.56973e-22	93%
Blast2go	Isocitrate lyase	IPR006254	-	1.56973e-22	93%
Blast2go	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	1.56973e-22	93%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q41084

Fln msg: Distance to subject end: 497 aas, your sequence is shorter than subject: 91 - 573

Fln protein: MKLSLNCVIALLECKTYIDCGMSVLQMMDEEAKIEAEVAEVQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRTLKTHQA

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTATCACTCAGCCATTTTGGGGCTAAAGCTGATTTGAAAC_-_ATGAAGCTAAGCCTAAACTGCGTCATTGCACTGTTAGAGTGTAAAACTTATATAGATTGTGGAATGAGTGTGCTGCAGATGATGGACGAGGAAGCAAAAATTGAAGCAGAAGTAGCAGAGGTCCAAACATGGTGGAACTCAGAGCGATTTCGCCTCACACAGAGGCCATACACTGCAAAGGATGTAGTTCGTCTGAGAGGCACCATGCGCCAGAGCTATGCGTCCAATGAGCTGGCCAAAAAGCTATGGAGGACACTCAAAACCCACCAGGCAAA

Fln Alignment:

sp_v1.1_unigene72445___MMDXXXXXXXXXXXXQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRTLKTHQA
Q41084_______________MMDEEAKIEAEVAEVQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRTLKTHQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain