SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene72136

Length: 393 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene72136
CGTCGTGACCTTGGCTGTCACTCACGATATTTGTTTTTTCTGTTGCTGGCTTTTGTTGCAGAAAGTAGAAAATGAGCTACTTTCCCAGTACGAGAGTCAACTTCTTGAGTTGGTGCTTCCAGGGTGCCATGCCTTGCTTAGAGATGAAAAGGTAGATGATCTTTCAAGGATGTATAGGTTGTTTTGTAGGATACGTAAAGGCTTGGAACCTTTGGCTCAAGTTTTCAAACAGGTTGACACCAATTGGTGCATATTGATTGAAAATATCCTAATACGTTACTGATGAGGTTACATCATTAGTCAAGCACGCGGAAGATGCAGCAAACAATGAAAAGGAGTTTCTAGGGGAAGTTCTTAAATTGTGTTGCAAGCGCTTGCAATATGTCAATGAGT

Ace file of the UniGene sp_v1.1_unigene72136

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CUL1 n=8 Tax=Poaceae RepID=Q5ZC88_ORYSJ	-	-	8.0e-15	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	cullin-like protein	-	-	6.21154e-17	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cullin, N-terminal	IPR001373	-	6.21154e-17	85%
Blast2go	Cullin repeat-like-containing domain	IPR016159	-	6.21154e-17	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQB2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 381 aas, your sequence is shorter than subject: 94 - 744

Fln protein: VVTLAVTHDICFFCCWLLLQKVENELLSQYESQLLELVLPGCHALLRDEKVDDLSRMYRLFCRIRKGLEPLAQVFKQVDTNWCILIENILIRY*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGATATTTGTTTTTTCTGTTGCTGGCTTTTGTTGCAGAAAGTAGAAAATGAGCTACTTTCCCAGTACGAGAGTCAACTTCTTGAGTTGGTGCTTCCAGGGTGCCATGCCTTGCTTAGAGATGAAAAGGTAGATGATCTTTCAAGGATGTATAGGTTGTTTTGTAGGATACGTAAAGGCTTGGAACCTTTGGCTCAAGTTTTCAAACAGGTTGACACCAATTGGTGCATATTGATTGAAAATATCCTAATACGTTACTGATGAGGTTACATCATTAGTCAAGCACGCGGAAGATGCAGCAAACAATGAAAAGGAGTTTCTAGGGGAAGTTCTTAAATTGTGTTGCAAGCGCTTGCAATATGTCAATGAGT

Fln Alignment:

sp_v1.1_unigene72136___LLQKVXXXXXXXXXXXXXXXXXPGCHALLRDEKVDDLSRMYRLFCRIRKGLEPLAQVFKQ
B8LQB2_______________LLEKVQNELLSQYESQLLEKEHSGCHALLRDDKVDDLSRMYRLFYRIPKGLEPVSLIFKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain