SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene71986

Length: 397 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene71986
ATATAGGAACTTACCTCAACATGAGTTCAACTTACCATCCTCAAACAGATGACCAAACAGAGGTTGTCAATAAATGTTTAGAAGCTTACTTACATTGTTACGCCATAGACAAACAAAATAAGTGTGTTCAATGGTTACATCTCGCTGAATGGTGGTACAATTCAACTTACCACACACACGTCAACAAAAATGACTCCATTTCAAGCTCTGTACGATTATGAACCTTCGAAATGGAAGGACTTTTCTATCATCGAGATGAAGCTTCCAGCTATTAAAAACCAGTTAGAGGAAACCCAAAAAGTCATCCAAACTCTAAAAGAAAATCTAAATAATGCAAGGAATCATATGAAGCAGCAAGCTGACCGAAATAGAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene71986 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=1 Tax=Primula vulgaris RepID=A5X2S4_9ERIC	-	-	7.0e-26	53%
FL-Next	tr=Polyprotein; Primula vulgaris.	-	-	0.0	53%
Blast2go	retrotransposon unclassified	-	-	1.27008e-25	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	1.27008e-25	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribonuclease H-like domain	IPR012337	-	1.27008e-25	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5X2S4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 105 aas, your sequence is shorter than subject: 73 - 1359

Fln protein: IGTYLNMSSTYHPQTDDQTEVVNKCLEAYLHCYAIDKQNKCVQWLHLAEWWYNSTYHTHVNKNDSISSSVRL*

Protein Length: 74

Fln nts: ATATAGGAACTTACCTCAACATGAGTTCAACTTACCATCCTCAAACAGATGACCAAACAGAGGTTGTCAATAAATGTTTAGAAGCTTACTTACATTGTTACGCCATAGACAAACAAAATAAGTGTGTTCAATGGTTACATCTCGCTGAATGGTGGTACAATTCAACTTACCACACACACGTCAACAAAAATGACTCCATTTCAAGCTCTGTACGATTATGAACCTTCGAAATGGAAGGACTTTTCTATCATCGAGATGAAGCTTCCAGCTATTAAAAACCAGTTAGAGGAAACCCAAAAAGTCATCCAAACTCTAAAAGAAAATCTAAATAATGCAAGGAATCATATGAAGCAGCAAGCTGACCGAAATAGAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene71986___IGTYLNMSSTYHPQTDDQTEVVNKCLEAYLHCYAIDKQNKCVQWLHLAEWWYNSTYHTHV
A5X2S4_______________LGTKLLLSTAFHPQTDGQTEIVNKSLETYLRCYTSQYPKNWAKWIYLAEFWYNSTTHTSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain