SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene71789

Length: 278 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene71789
CGTCGTGACCTTGGCTGTCACTCAATTCTTATTGGTGCTGGAGGTGTTGTCAAGCTTTGCGACTTTGGATTTGCAAGAGCTATGTCTTGCAATACAATGGTGCTTCGTTCAATCAAAGGGACCCCGCTTTATATGGCTCCTGAACTAGTACGCGAACAACCATACAATCATACAGCAGATCTATGGTCACTTGGTGTAATCTTATACGAGCTTTATGTTGGTCAACCTCCTTTTTATACGAATTCTGTCTATACGCTTATTCGGCACATTGTTAAGGA

Ace file of the UniGene sp_v1.1_unigene71789

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative (EC:2.7.11.17); K06228 fused [EC:2.7.11.1]	-	-	2.0e-40	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	protein	-	-	2.08793e-43	92%

Source	ECs	Term	Type	e value	Identity
AutoFact	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	2.0e-40	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytokinesis by cell plate formation	GO:0000911	Biological Process	2.08793e-43	92%
Blast2go	embryo sac cellularization	GO:0009558	Biological Process	2.08793e-43	92%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	2.08793e-43	92%
Blast2go	phragmoplast	GO:0009524	Cellular Component	2.08793e-43	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	2.08793e-43	92%
Blast2go	Protein kinase-like domain	IPR011009	-	2.08793e-43	92%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	2.08793e-43	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8V0

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 92 - 319

Fln protein: RRDLGCHSILIGAGGVVKLCDFGFARAMSCNTMVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELYVGQPPFYTNSVYTLIRHIVK

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTATTGGTGCTGGAGGTGTTGTCAAGCTTTGCGACTTTGGATTTGCAAGAGCTATGTCTTGCAATACAATGGTGCTTCGTTCAATCAAAGGGACCCCGCTTTATATGGCTCCTGAACTAGTACGCGAACAACCATACAATCATACAGCAGATCTATGGTCACTTGGTGTAATCTTATACGAGCTTTATGTTGGTCAACCTCCTTTTTATACGAATTCTGTCTATACGCTTATTCGGCACATTGTTAAGGA

Fln Alignment:

sp_v1.1_unigene71789___RDLGCHSILIGAGGVVKLCDFGFARAMSCNTMVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELYVGQPPF
D5A8V0_______________RDLKSPNLLVDKTWTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELITLQQPW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain