SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene71652

Length: 373 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene71652
CGTCGTGACCTTGGCTGTCACTCAATTTTGATTATATGGACTATCGAAGCACTAACCAAGCCTCACAAGGTAGGAACTCTGAGCACGGGCGTATGGGGTTCGAAACCCAAAACGCGGATTTCATCTAAAGTAGGTTGAGCTTTAATATCAGCATGATTATGCAGGGGTTAGTACAAGCATTGGACTGACACCATCTCCAATAACACATTTCTCAAGAATAATTGGAAACAAGAATCTATCTGTAGGGGTTGAAGTTTCTTTTTACATTGCATCAGGAAACTTATTGAAATATGATGCAAGCTTGAGTATTTCAAAGCTTTATTGTGTTTCTTCTTTGACATTGTAAGACTTGGTCCTTGCCATTCTTATAACT

Ace file of the UniGene sp_v1.1_unigene71652

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	porin/voltage-dependent anion-selective channel protein; K05862 voltage-dependent anion channel	-	-	3.0e-13	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	voltage-dependent anion channel	-	-	9.62381e-20	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to bacterium	GO:0009617	Biological Process	9.62381e-20	71%
Blast2go	voltage-gated anion channel activity	GO:0008308	Molecular Function	9.62381e-20	71%
Blast2go	protein binding	GO:0005515	Molecular Function	9.62381e-20	71%
Blast2go	vacuole	GO:0005773	Cellular Component	9.62381e-20	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.62381e-20	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	9.62381e-20	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	9.62381e-20	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NU89

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 91 aas, your sequence is shorter than subject: 115 - 276

Fln protein: VVTLAVTQF*LYGLSKH*PSLTR*EL*ARAYGVRNPKRGFHLK*VEL*YQHDYAGVSTSIGLTPSPITHFSRIIGNKNLSVGVEVSFYIASGNLLKYDASLSISKLYCVSSLTL*

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGATTATATGGACTATCGAAGCACTAACCAAGCCTCACAAGGTAGGAACTCTGAGCACGGGCGTATGGGGTTCGAAACCCAAAACGCGGATTTCATCTAAAGTAGGTTGAGCTTTAATATCAGCATGATTATGCAGGGGTTAGTACAAGCATTGGACTGACACCATCTCCAATAACACATTTCTCAAGAATAATTGGAAACAAGAATCTATCTGTAGGGGTTGAAGTTTCTTTTTACATTGCATCAGGAAACTTATTGAAATATGATGCAAGCTTGAGTATTTCAAAGCTTTATTGTGTTTCTTCTTTGACATTGTAAGACTTGGTCCTTGCCATTCTTATAACT

Fln Alignment:

sp_v1.1_unigene71652___VEL*YQHDYAGVSTSIGLTPSPITHFSRIIGNKNLSVGVEVSFYIASGNLLKYDASLSISKLYCVSSLTL
A9NU89_______________VELQYLHDYAGVSTSIGLTPSPITHFSGVIGNDTFSVGGEVSFDTASGNFLKYDAGLSFSKPDFVSSLTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain