SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene71522

Length: 328 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene71522
CGTCGTGACCTTGGCTGCACTCAGGTGCAGGGTTGGCAATGGCAACCATGGATATCATAAAATTACGTGGTGACCTGCTGTCACTTTTCTTGATGTTGGAGGAAATGCTTCTGAAGGGCAGGTGGTGGAAGCATTTAAAATTTTGACTTCTGATGAAAAGGTCAAAGCAATTCTAGTCAACATTTTTGGAGGCATTATGAAATGTGATATCATTGCAAGTGGAATTGTAAATGCTGCAAAACAGGTTCAATTGAAGGTCCCTGTGGTGGTTCGTTTGGAAGGGACAAACGTTGATTTGGGTAAAAGCATTCTTAAGGAAAGTGGAATG

Ace file of the UniGene sp_v1.1_unigene71522

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Succinyl-CoA synthetase beta chain, putative n=1 Tax=Ricinus communis RepID=B9SV11_RICCO	-	-	8.0e-38	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	succinyl- ligase beta subunit	-	-	1.67359e-39	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	1.67359e-39	95%
Blast2go	ligase activity	GO:0016874	Molecular Function	1.67359e-39	95%
Blast2go	copper ion binding	GO:0005507	Molecular Function	1.67359e-39	95%
Blast2go	ATP binding	GO:0005524	Molecular Function	1.67359e-39	95%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.67359e-39	95%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8F9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 21 aas, your sequence is shorter than subject: 109 - 425

Fln protein: VVTLAALRCRVGNGNHGYHKITW*PAVTFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDIIASGIVNAAKQVQLKVPVVVRLEGTNVDLGKSILKESGM

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGCACTCAGGTGCAGGGTTGGCAATGGCAACCATGGATATCATAAAATTACGTGGTGACCTGCTGTCACTTTTCTTGATGTTGGAGGAAATGCTTCTGAAGGGCAGGTGGTGGAAGCATTTAAAATTTTGACTTCTGATGAAAAGGTCAAAGCAATTCTAGTCAACATTTTTGGAGGCATTATGAAATGTGATATCATTGCAAGTGGAATTGTAAATGCTGCAAAACAGGTTCAATTGAAGGTCCCTGTGGTGGTTCGTTTGGAAGGGACAAACGTTGATTTGGGTAAAAGCATTCTTAAGGAAAGTGGAATG

Fln Alignment:

sp_v1.1_unigene71522___FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDIIASGIVNAAKQVQLKVPVVVRLEGTNVDLGKSILKESGM
D5A8F9_______________FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVQLKVPVVVRLEGTNVDLGKSILKESGL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain