SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene71503

Length: 380 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene71503
CGTCGTGACCTTGGCTGTCACTCAGTGGAGGTGCAAGGGTCCGCGTGAAGCTTCAATTTTGGCGCATAATTCCATCCCTGCTGCTGAGTCTCACCCCGGAATTCGAAGGAGTTCCGTATACTTTCTTTAAGCAGTCAAAGGGGTGCAGGGTGACGCTATACCACGATGCTCATGTACCCGCCTCTTTTAATCCCGCCCTGGGACCCCAGGTGTACCGGCAGCACCGGTACTGGGAGGACCTGTTTGACTGCATCTCAAAAGCGAAGCACCTTGTTTATATCACAGGCTGGTCTGTGTATACGGGAATAAGGCTGATCAGAGACCGGAAATCCGGAGGGGAATTACAAACGCAAAGTACGCTAGGGGAGCTGCTGAAACGC

Ace file of the UniGene sp_v1.1_unigene71503

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLDALPHA2 (phosphlipase d alpha 2); phospholipase D (EC:2.7.7.38 3.1.4.4)	-	-	5.0e-27	48%
FL-Next	sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	phospholipase d	-	-	1.42012e-31	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phospholipase D.	EC:3.1.4.4	-	1.42012e-31	65%

Source	KEGGs	Term	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564	1.42012e-31	65%
Blast2go	Ether lipid metabolism	00565	1.42012e-31	65%
Blast2go	Metabolic pathways	01100	1.42012e-31	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	1.42012e-31	65%
Blast2go	fatty acid metabolic process	GO:0006631	Biological Process	1.42012e-31	65%
Blast2go	seed germination	GO:0009845	Biological Process	1.42012e-31	65%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	1.42012e-31	65%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	1.42012e-31	65%
Blast2go	phospholipase D activity	GO:0004630	Molecular Function	1.42012e-31	65%
Blast2go	protein binding	GO:0005515	Molecular Function	1.42012e-31	65%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.42012e-31	65%
Blast2go	clathrin-coated vesicle	GO:0030136	Cellular Component	1.42012e-31	65%
Blast2go	nucleus	GO:0005634	Cellular Component	1.42012e-31	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.42012e-31	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ49

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 572 aas, your sequence is shorter than subject: 126 - 861

Fln protein: S*PWLSLSGGARVRVKLQFWRIIPSLLLSLTPEFEGVPYTFFKQSKGCRVTLYHDAHVPASFNPALGPQVYRQHRYWEDLFDCISKAKHLVYITGWSVYTGIRLIRDRKSGGELQTQSTLGELLKR

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGGAGGTGCAAGGGTCCGCGTGAAGCTTCAATTTTGGCGCATAATTCCATCCCTGCTGCTGAGTCTCACCCCGGAATTCGAAGGAGTTCCGTATACTTTCTTTAAGCAGTCAAAGGGGTGCAGGGTGACGCTATACCACGATGCTCATGTACCCGCCTCTTTTAATCCCGCCCTGGGACCCCAGGTGTACCGGCAGCACCGGTACTGGGAGGACCTGTTTGACTGCATCTCAAAAGCGAAGCACCTTGTTTATATCACAGGCTGGTCTGTGTATACGGGAATAAGGCTGATCAGAGACCGGAAATCCGGAGGGGAATTACAAACGCAAAGTACGCTAGGGGAGCTGCTGAAACGC

Fln Alignment:

sp_v1.1_unigene71503___VRVKLQFWRIIPSLLLSLTPEFEGVPYTFFKQSKGCRVTLYHDAHVPASFNPAL---GPQVYRQHRYWEDLFDCISKAKHLVYITGWSVYTGIRLIRDRKSGGELQTQSTLGELLK
B8LQ49_______________LRLSIQFR---PAETEPLRKDGGGVPDTYFPLRKGGMVSVYQDAHVVDGLLPEIRLDGGKVFEHGKCWEEICHAILEAHHLVYITGWSIYHKVKLVREPTRPLPLGGDLNLGELLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain