SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene71131

Length: 253 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene71131
CGTCGTGACCTTGGCTGTCACTCAAGTTTGTTATTTACATGATAGATGCAGGGCCTGATATGTTTTTCCAGATCAAACAAGAGGATGAGGGGAAGACAGAAACACATTTCAGTACTGTGGTCAAGTGTATTGTTGAATCTCTGAAGATTCACATCATCAATAGAGATTCTGATGAAGTTGCAATATGTTTTTATAACACTAGAGTGAAGAAAAACATGCAGGAATCTGAGGGTGTCTATGTTTTCAATGTTCA

Ace file of the UniGene sp_v1.1_unigene71131

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent DNA helicase 2 subunit KU70 n=2 Tax=Arabidopsis RepID=KU70_ARATH	-	-	8.0e-20	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	ku70-like protein	-	-	1.18028e-33	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to heat	GO:0009408	Biological Process	1.18028e-33	73%
Blast2go	double-stranded DNA binding	GO:0003690	Molecular Function	1.18028e-33	73%
Blast2go	protein binding	GO:0005515	Molecular Function	1.18028e-33	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMC2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 525 aas, your sequence is shorter than subject: 83 - 630

Fln protein: S*PWLSLKFVIYMIDAGPDMFFQIKQEDEGKTETHFSTVVKCIVESLKIHIINRDSDEVAICFYNTRVKKNMQESEGVYVFNV

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTGTTATTTACATGATAGATGCAGGGCCTGATATGTTTTTCCAGATCAAACAAGAGGATGAGGGGAAGACAGAAACACATTTCAGTACTGTGGTCAAGTGTATTGTTGAATCTCTGAAGATTCACATCATCAATAGAGATTCTGATGAAGTTGCAATATGTTTTTATAACACTAGAGTGAAGAAAAACATGCAGGAATCTGAGGGTGTCTATGTTTTCAATGTTCA

Fln Alignment:

sp_v1.1_unigene71131___FVIYMIDAGPDMFFQIKQEDEGKTETHFSTVVKCIVESLKIHIINRDSDEVAICFYNTRVKKNMQESEGVYVFNV
B8LMC2_______________FVIYMIDAGPDMFFEIKQEDEGKTETHFSTVVKCIVESLKIRIINRDYDEVAICFYNTREKKNMQESEGVYVFNV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain