SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene71002

Length: 253 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene71002
CGTCGTGACCTTGGCTGTCACTCAATTGAGTTCTCATGCATTAGGAGCAGATCAAGGCAGCATTGAGAAGGACTTGAGGAAGAGAATCATGGAGTTTCTTAGTATTCCCTCTAGTGATTATACCATGGTTTTTACTGTTAGCAGAGGCTCTGCATTCAAACTGTTAGCAGAATCATACCCATTTCATCAGAATCGGAGGCTGGTGACTGTGTATGATTATGAGAGCCAGTCTGTGAATTGGATGGCCGACGGT

Ace file of the UniGene sp_v1.1_unigene71002

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Molybdopterin cofactor sulfurase, putative n=1 Tax=Ricinus communis RepID=B9S8P3_RICCO	-	-	3.0e-23	67%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	67%
Blast2go	molybdopterin cofactor	-	-	4.20764e-23	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.20764e-23	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	4.20764e-23	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HEF2

Fln msg: Distance to subject end: 633 aas, your sequence is shorter than subject: 84 - 893

Fln protein: VVTLAVTQLSSHALGADQGSIEKDLRKRIMEFLSIPSSDYTMVFTVSRGSAFKLLAESYPFHQNRRLVTVYDYESQSVNWMADG

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGAGTTCTCATGCATTAGGAGCAGATCAAGGCAGCATTGAGAAGGACTTGAGGAAGAGAATCATGGAGTTTCTTAGTATTCCCTCTAGTGATTATACCATGGTTTTTACTGTTAGCAGAGGCTCTGCATTCAAACTGTTAGCAGAATCATACCCATTTCATCAGAATCGGAGGCTGGTGACTGTGTATGATTATGAGAGCCAGTCTGTGAATTGGATGGCCGACGGT

Fln Alignment:

sp_v1.1_unigene71002___LSSHAL--GADQGSIEKDLRKRIMEFLSIPSSDYTMVFTVSRGSAFKLLAESYPFHQNRRLVTVYDYESQSVNWMA
B9HEF2_______________LSNHALYGGAEKGTVEHDIKTRIMDYLNIPEHEYGLVFTVSRGSAFKLLAESYPFHTNKKLLTMFDYESQSVNWMA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain