SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene70949

Length: 298 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene70949
CGTCGTGACCTTGGCTGTCACTCAGAGATAACTGTTGCGAAGTTTGTCCTTTATTAGTCTCATCTCCTTCCCGTTTCTTCTGATTTTCATAACTGTGGAAACTTCAATGGAAGGCACGGTATTGTCAGTGACTCTAGACAACTGGACAGATGATGAAGTTGATTCTATGGTTGATGTTGGTGGAAATGCTGCTGCCAATGCAATATATGAAGCTTTCCTACCTGAAACTTCTCAAAAGCCTGGACCAGAAGCATCTTCTGAAGAGCGGTCATATTTATCAGGCAGAAGTATGAGCTGC

Ace file of the UniGene sp_v1.1_unigene70949

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP-ribosylation factor GTPase-activating protein AGD12 n=2 Tax=Arabidopsis RepID=AGD12_ARATH	-	-	1.0e-14	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	zac arf gtpase activator phospholipid binding	-	-	8.35557e-16	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	phospholipid binding	GO:0005543	Molecular Function	8.35557e-16	88%
Blast2go	ARF GTPase activator activity	GO:0008060	Molecular Function	8.35557e-16	88%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	8.35557e-16	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.35557e-16	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Arf GTPase activating protein	IPR001164	-	8.35557e-16	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 239 aas, your sequence is shorter than subject: 99 - 370

Fln protein: VVTLAVTQR*LLRSLSFISLISFPFLLIFITVETSMEGTVLSVTLDNWTDDEVDSMVDVGGNAAANAIYEAFLPETSQKPGPEASSEERSYLSGRSMSC

Protein Length: 100

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGATAACTGTTGCGAAGTTTGTCCTTTATTAGTCTCATCTCCTTCCCGTTTCTTCTGATTTTCATAACTGTGGAAACTTCAATGGAAGGCACGGTATTGTCAGTGACTCTAGACAACTGGACAGATGATGAAGTTGATTCTATGGTTGATGTTGGTGGAAATGCTGCTGCCAATGCAATATATGAAGCTTTCCTACCTGAAACTTCTCAAAAGCCTGGACCAGAAGCATCTTCTGAAGAGCGGTCATATTTATCAGGCAGAAGTATGAGCTGC

Fln Alignment:

sp_v1.1_unigene70949___VLSVTLDNWTDDEVDSMVDVGGNAAANAIYEAFLPETSQKPGPEASSEERS
B8LLJ7_______________VLSVTLDEWTGDQVDAMIDVGGNASANAIYESLLPENFEKPGPEASSEERS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain