SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene70910

Length: 400 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene70910
CGTCGTGACCTTGGCTGTCACTCAGGGCAGCCTCGCCATTCAGCTGGCAAAGAATGTGTATGGAGCTTCCAGGATCGTTTCCACCGCTAGCACAGGGAAGCTCGAGTTCGTGAAAAGCCTAGGGGCAGATCTGGTCGTCGTTACCTTGGCTGTCACTCAGGTTTCCGAGAAATTTGATTTTGTATTCGATACCATAGGGGATTCCTTCAAATCTCATGTGTTGGCGAAAGAGGAAGGCAAGGTTGTGGACATAGCGTTGTTCGAGCCTCATCCCAGAGCTCAGTTTTACATAGTGTCAGTCAGCGCACATAACCTGGAGAAGTTGCAACCCTATATAGAGTGTGGGAAGCTGAAACCAGTGATTGATCCGAAGAGCCCGTACTCATTCTCAAACGTTATA

Ace file of the UniGene sp_v1.1_unigene70910

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alcohol dehydrogenase, putative (EC:1.6.5.5)	-	-	1.0e-29	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	quinone oxidoreductase-like protein at1g23740	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	75%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	75%
Blast2go	NAD(P)-binding domain	IPR016040	-	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZF8

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 133 - 310

Fln protein: VVTLAVTQGSLAIQLAKNVYGASRIVSTASTGKLEFVKSLGADLVVVTLAVTQVSEKFDFVFDTIGDSFKSHVLAKEEGKVVDIALFEPHPRAQFYIVSVSAHNLEKLQPYIECGKLKPVIDPKSPYSFSNVI

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGCAGCCTCGCCATTCAGCTGGCAAAGAATGTGTATGGAGCTTCCAGGATCGTTTCCACCGCTAGCACAGGGAAGCTCGAGTTCGTGAAAAGCCTAGGGGCAGATCTGGTCGTCGTTACCTTGGCTGTCACTCAGGTTTCCGAGAAATTTGATTTTGTATTCGATACCATAGGGGATTCCTTCAAATCTCATGTGTTGGCGAAAGAGGAAGGCAAGGTTGTGGACATAGCGTTGTTCGAGCCTCATCCCAGAGCTCAGTTTTACATAGTGTCAGTCAGCGCACATAACCTGGAGAAGTTGCAACCCTATATAGAGTGTGGGAAGCTGAAACCAGTGATTGATCCGAAGAGCCCGTACTCATTCTCAAACGTTATA

Fln Alignment:

sp_v1.1_unigene70910___GSLAIQLAKNVYGASRIVSTASTGKLEFVKSLGADLVV--VTLAVTQVSEKFDFVFDTIGDSFKSHVLAKEEGKVVDIALFEPHPRAQFYIVSVSAHNLEKLQPYIECGKLKPVIDPKSPYSFSNVI
A9NZF8_______________GSLAIQLAKHVYGASRIVSTASTGKLDFVKSLGADLVIDYTKQSYDQISEKFDFVFDTIGEAAKSHVVAKEEAKVLDIASFQPHPRAEFFLVSPSAHNLEKLQPYIESEKLKPVIDPKSPYSFSDVI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain