SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene70870

Length: 391 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene70870
CGTCGTGACCTTGGCTGTCACTCATTTAATTCCTTCATGCACAGATCTGGAGTCTCTACAGCTTGGGGAGGTAATCCACGGTTACGTTATTAGAAGTGGGTTCGAATCACATCTTCTTGTTGGGAATGCTTTGATTGACATGTATTCTAAATGCAGGAGTGTAGCAGATGCACATAACTTGTTTGTGGGCTTGTCTCGGAAAGATGTAATCTCGTGGAATGCCATGATTGCAGGTTATATATATAATGGGTACTGTGATGAGGCTTTGGAAATCTTTCATCAGATGCATTTGGCTTCTGCAAAGCCCAACTTGGTCACATGGAATGCCATGATTTCCGGGTTTACTCAGAATGGACGCTTTCACCAGGCGCTGGAGCTCTTCAGTGAAATG

Ace file of the UniGene sp_v1.1_unigene70870

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	6.0e-27	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	pentatricopeptide repeat-containing	-	-	1.308e-29	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	1.308e-29	64%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.308e-29	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.308e-29	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 53 aas, your sequence is shorter than subject: 130 - 394

Fln protein: VVTLAVTHLIPSCTDLESLQLGEVIHGYVIRSGFESHLLVGNALIDMYSKCRSVADAHNLFVGLSRKDVISWNAMIAGYIYNGYCDEALEIFHQMHLASAKPNLVTWNAMISGFTQNGRFHQALELFSEM

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTAATTCCTTCATGCACAGATCTGGAGTCTCTACAGCTTGGGGAGGTAATCCACGGTTACGTTATTAGAAGTGGGTTCGAATCACATCTTCTTGTTGGGAATGCTTTGATTGACATGTATTCTAAATGCAGGAGTGTAGCAGATGCACATAACTTGTTTGTGGGCTTGTCTCGGAAAGATGTAATCTCGTGGAATGCCATGATTGCAGGTTATATATATAATGGGTACTGTGATGAGGCTTTGGAAATCTTTCATCAGATGCATTTGGCTTCTGCAAAGCCCAACTTGGTCACATGGAATGCCATGATTTCCGGGTTTACTCAGAATGGACGCTTTCACCAGGCGCTGGAGCTCTTCAGTGAAATG

Fln Alignment:

sp_v1.1_unigene70870___LAVTHLIPSCTDLESLQLGEVIHGYVIRSGFESHLLVGNALIDMYSKCRSVADAHNLFVGLSRKDVISWNAMIAGYIYNGYCDEALEIFHQMHLASAKPNLVTWNAMISGFTQNGRFHQALELFSEM
B8LKN6_______________VTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKMQCAGLKIDVITWNTLITAYAQNGYGDQTLELFQQM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain