SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene70812

Length: 344 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene70812
CGTCGTGACCTTGGCTGTCACTCATGTGTACCCTTGGGAGACTTTCTTAGGTCATGACGAACTGATATTTGCCTCTTTCTTTGAACTGTATAATTATTTGTCACAGTTGGGATATGTAACTTAAAATGCATTGATTTTCCAGGTCTTCGTGTCGTGGTTTTGGCTGTCACTCTTCTTTGGTTGCCTTATTATCAACATTTCCTTGAGCTATCCTACGTTGCCTGGATGGATTCCCTCGCCATTTTTCCCAATCTATATTGATAGGATTCATCGAGCGAAGCATGGAAGCGATTCCGAAGTTTATGACACAGAAGGAAGGTTTGTCCCCTCTAAATTCGAAGAAA

Ace file of the UniGene sp_v1.1_unigene70812

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caleosin n=1 Tax=Cycas revoluta RepID=B8XX15_CYCRE	-	-	1.0e-20	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	embryo-specific protein 1	-	-	1.94907e-20	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Heme oxygenase.	EC:1.14.99.3	-	1.94907e-20	59%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860		1.94907e-20	59%
Blast2go	Glycerol-3-phosphate O-acyltransferase.	EC:2.3.1.15	-	1.94907e-20	59%

Source	KEGGs	Term	e value	Identity
Blast2go	Glycerolipid metabolism	00561	1.94907e-20	59%
Blast2go	Glycerophospholipid metabolism	00564	1.94907e-20	59%
Blast2go	Metabolic pathways	01100	1.94907e-20	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphatidylglycerol biosynthetic process	GO:0006655	Biological Process	1.94907e-20	59%
Blast2go	lipid particle organization	GO:0034389	Biological Process	1.94907e-20	59%
Blast2go	oxylipin biosynthetic process	GO:0031408	Biological Process	1.94907e-20	59%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	1.94907e-20	59%
Blast2go	heme oxygenase (decyclizing) activity	GO:0004392	Molecular Function	1.94907e-20	59%
Blast2go	linoleic acid epoxygenase activity	GO:0071614	Molecular Function	1.94907e-20	59%
Blast2go	glycerol-3-phosphate O-acyltransferase activity	GO:0004366	Molecular Function	1.94907e-20	59%
Blast2go	integral to membrane	GO:0016021	Cellular Component	1.94907e-20	59%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	1.94907e-20	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P193

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 88 aas, your sequence is shorter than subject: 114 - 242

Fln protein: VVTLAVTHVYPWETFLGHDELIFASFFELYNYLSQLGYVT*NALIFQVFVSWFWLSLFFGCLIINISLSYPTLPGWIPSPFFPIYIDRIHRAKHGSDSEVYDTEGRFVPSKFEE

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTGTACCCTTGGGAGACTTTCTTAGGTCATGACGAACTGATATTTGCCTCTTTCTTTGAACTGTATAATTATTTGTCACAGTTGGGATATGTAACTTAAAATGCATTGATTTTCCAGGTCTTCGTGTCGTGGTTTTGGCTGTCACTCTTCTTTGGTTGCCTTATTATCAACATTTCCTTGAGCTATCCTACGTTGCCTGGATGGATTCCCTCGCCATTTTTCCCAATCTATATTGATAGGATTCATCGAGCGAAGCATGGAAGCGATTCCGAAGTTTATGACACAGAAGGAAGGTTTGTCCCCTCTAAATTCGAAGAAA

Fln Alignment:

sp_v1.1_unigene70812___FGCLIINISLSYPTLPGWIPSPFFPIYIDRIHRAKHGSDSEVYDTEGRFVPSKFE
A9P193_______________FVAVIINVAFSYYTLPGWIPSLKFPVYVDNIHRAKHGSDTEVYDTEGRFDPDKFD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
150		50		50	1.0
152		50		50	1.0
158	50		50		1.0
159		50		50	1.0
160		50		50	1.0
163	50		50		1.0
164	50		50		1.0
169	50		50		1.0
171	50	50			1.0
178	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
150		50		50	1.0
152		50		50	1.0
158	50		50		1.0
159		50		50	1.0
160		50		50	1.0
163	50		50		1.0
164	50		50		1.0
169	50		50		1.0
171	50	50			1.0
178	50			50	1.0

Position	A %	C %	G %	T %	Probability
150		50		50	1.0
152		50		50	1.0
158	50		50		1.0
159		50		50	1.0
160		50		50	1.0
163	50		50		1.0
164	50		50		1.0
169	50		50		1.0
171	50	50			1.0
178	50			50	1.0

Position	A %	C %	G %	T %	Probability
150		50		50	1.0
152		50		50	1.0
158	50		50		1.0
159		50		50	1.0
160		50		50	1.0
163	50		50		1.0
164	50		50		1.0
169	50		50		1.0
171	50	50			1.0
178	50			50	1.0