SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene70731

Length: 385 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene70731
CGTCGTGACCTTGGCTGTCACTCATTTCTTGTGGTATTCTCCATACTGCTGGACCGCCTTAATATTGATATTACAACCTACGTTAATTGCAGCCACTCCAGAATCGATGCATACAATAATACTTTGCCCCGCTGCTGCACAATGATTAGAGGTTTGCCCAAGACGAGGTACGGAAGGTTAAGAAGAAGATCAGGTGATATAAATATGAATACCTCATCTTCATGTGCAATCTGTTTGGGGTATTTCGGGGAAGAGGATGAAGTCCGTGTTCTTCTCAACTGCAGACATTATTTTCATATTTCGTGCATCGATCGCTGGCTTCTTCTCTGTAGTTCCACAAACTCTTCATGCCCTCTGTGCAGAGCCACTGTCACTGTCGTTATCA

Ace file of the UniGene sp_v1.1_unigene70731

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9STH4_RICCO	-	-	1.0e-12	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	ring finger	-	-	2.93752e-29	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	2.93752e-29	63%
Blast2go	Zinc finger, RING-CH-type	IPR011016	-	2.93752e-29	63%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	2.93752e-29	63%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	2.93752e-29	63%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P183

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 128 - 230

Fln protein: RRDLGCHSFLVVFSILLDRLNIDITTYVNCSHSRIDAYNNTLPRCCTMIRGLPKTRYGRLRRRSGDINMNTSSSCAICLGYFGEEDEVRVLLNCRHYFHISCIDRWLLLCSSTNSSCPLCRATVTVVI

Protein Length: 129

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTTGTGGTATTCTCCATACTGCTGGACCGCCTTAATATTGATATTACAACCTACGTTAATTGCAGCCACTCCAGAATCGATGCATACAATAATACTTTGCCCCGCTGCTGCACAATGATTAGAGGTTTGCCCAAGACGAGGTACGGAAGGTTAAGAAGAAGATCAGGTGATATAAATATGAATACCTCATCTTCATGTGCAATCTGTTTGGGGTATTTCGGGGAAGAGGATGAAGTCCGTGTTCTTCTCAACTGCAGACATTATTTTCATATTTCGTGCATCGATCGCTGGCTTCTTCTCTGTAGTTCCACAAACTCTTCATGCCCTCTGTGCAGAGCCACTGTCACTGTCGTTATCA

Fln Alignment:

sp_v1.1_unigene70731___GCHSFLVVFSILLDRLNIDITTYVNCSHSRIDAYNN-TLPRCCTMIRGLPKTRYGRLRRRSGDINMN----TSSSCAICLGYFGEEDEVRVLLNCRHYFHISCIDRWLLLCSSTNSSCPLCRATV
A9P183_______________GLLALLFGFSTLLGMLNINVN---RSRSSRINRYNRRTLSRRSKLIRALPIGRYGRLSRRSDDNDVNRNDSSSSSCAICLGGIGEEEGVRILPNCRHYFHISCIDRWLLLC-PTNSSCPLCRASV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain