SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene70631

Length: 353 nt

UniGene Fasta

>sp_v1.1_unigene70631
CGTCGTGACCTTGGCTGTCACTCAAAAGATTTGTATGGTATTGGAAGGAAGGAGTTTGAGCAACATATGGAGCTCATGGGAAGTTTGAGACATCGTCGTGTCGTTGCTTTCAGTCCTATTATTTTGCTAGAGATGAAAAGCTTCTGGTCTATGACTATATGCCAAATGGGAGTCTGTATGCACTTCTTCATGGTAGCCGAGGACCTGGTAGAACACCCCTAGACTGGACAACTAGAATGAAGATAGCACTTGGTGCAGCCAAAGGCTTGGCATTTATTCACAGCCACTGCAAGTCCCCCAAGATTGGCCACGGAAACATCAAGTCTTCCAATATTTTGTTAGACAGAAATGGG

Ace file of the UniGene sp_v1.1_unigene70631

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat transmembrane protein kinase, putative	-	-	4.0e-32	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	at1g68400 t2e12_5	-	-	9.56078e-37	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	9.56078e-37	85%
Blast2go	protein binding	GO:0005515	Molecular Function	9.56078e-37	85%
Blast2go	cell part	GO:0044464	Cellular Component	9.56078e-37	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	9.56078e-37	85%
Blast2go	Protein kinase-like domain	IPR011009	-	9.56078e-37	85%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	9.56078e-37	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 173 aas, your sequence is shorter than subject: 117 - 340

Fln protein: S*PWLSLKRFVWYWKEGV*ATYGAHGKFETSSCRCFQSYYFARDEKLLVYDYMPNGSLYALLHGSRGPGRTPLDWTTRMKIALGAAKGLAFIHSHCKSPKIGHGNIKSSNILLDRNG

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAGATTTGTATGGTATTGGAAGGAAGGAGTTTGAGCAACATATGGAGCTCATGGGAAGTTTGAGACATCGTCGTGTCGTTGCTTTCAGTCCTATTATTTTGCTAGAGATGAAAAGCTTCTGGTCTATGACTATATGCCAAATGGGAGTCTGTATGCACTTCTTCATGGTAGCCGAGGACCTGGTAGAACACCCCTAGACTGGACAACTAGAATGAAGATAGCACTTGGTGCAGCCAAAGGCTTGGCATTTATTCACAGCCACTGCAAGTCCCCCAAGATTGGCCACGGAAACATCAAGTCTTCCAATATTTTGTTAGACAGAAATGGG

Fln Alignment:

sp_v1.1_unigene70631___QSYYFARDEKLLVYDYMPNGSLYALLHGSRGPGRTPLDWTTRMKIALGAAKGLAFIHSHCKSPKIGHGNIKSSNILL
B8LN40_______________RAFYYSKDEKLLVYDYMPTGSLSALLHGSRGSGRTPLDWDTRMRIALGAARGISHIHEE-GGGKFTHGNIKSSNVLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain