SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene70550

Length: 307 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene70550
CGTCGTGACCTTGGCTGTCACTCAATTGCTGGTGAAAAGTTTACAGCTTCTGGTCTCATGGTTCTAGAGAGGAATTACTTGGAGATTTATAGGTATGAATCTTGGGGAGGTTCAACTATTCCAACATTTATGGCTCGACAACAGTTTGTTCCATCAAGATTGACACTTGATGCAAGTATCACAAGACCACCCCCTCTTTTGAGTGAAGCTGACTTGCTAAGTTGCATGGATAAGGCAGGAATTGGCACTGATGCAACTATGCATGATCATATTAAAAAGCTATTAGATCGGTGCTATGCTACTAAAG

Ace file of the UniGene sp_v1.1_unigene70550

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA topoisomerase n=1 Tax=Sorghum bicolor RepID=C5WWW3_SORBI	-	-	3.0e-37	74%
FL-Next	sp=DNA topoisomerase; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	74%
Blast2go	dna topoisomerase	-	-	4.97908e-37	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	4.97908e-37	82%
Blast2go	resolution of meiotic recombination intermediates	GO:0000712	Biological Process	4.97908e-37	82%
Blast2go	mitosis	GO:0007067	Biological Process	4.97908e-37	82%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	4.97908e-37	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA topoisomerase, type IA	IPR000380	-	4.97908e-37	82%
Blast2go	DNA topoisomerase, type IA, central	IPR013497	-	4.97908e-37	82%
Blast2go	DNA topoisomerase, type IA, central region, subdomain 1	IPR013824	-	4.97908e-37	82%
Blast2go	DNA topoisomerase, type IA, core domain	IPR023405	-	4.97908e-37	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5WWW3

Fln msg: Distance to subject end: 322 aas, your sequence is shorter than subject: 102 - 860

Fln protein: RRDLGCHSIAGEKFTASGLMVLERNYLEIYRYESWGGSTIPTFMARQQFVPSRLTLDASITRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRCYATK

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGCTGGTGAAAAGTTTACAGCTTCTGGTCTCATGGTTCTAGAGAGGAATTACTTGGAGATTTATAGGTATGAATCTTGGGGAGGTTCAACTATTCCAACATTTATGGCTCGACAACAGTTTGTTCCATCAAGATTGACACTTGATGCAAGTATCACAAGACCACCCCCTCTTTTGAGTGAAGCTGACTTGCTAAGTTGCATGGATAAGGCAGGAATTGGCACTGATGCAACTATGCATGATCATATTAAAAAGCTATTAGATCGGTGCTATGCTACTAAAG

Fln Alignment:

sp_v1.1_unigene70550___IAGEKFTASGLMVLERNYLEIYRYESWGGSTIPTFMARQQFVPSRLTLDASITRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRCYATK
C5WWW3_______________IAGEQFNASGRVILAKNYLDVYRFDSWGGTLLPTYNIGQQFVPTTLTLDSGVTRPPPLLAEADLLSCMDKAGIGTDATMHDHIKKLLDRCYATK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain