SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene70114

Length: 404 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene70114
CGTCGTGACCTTGGCTGTCACTCATCTTGTAAAGACGGACTGGTCTAAAGCTCCCTTCGTCGCAACTTATCGCAATTTTAAAGTTGAGTCATGTAAAACCAGGAAGAACGGTTCCTCCTGCAGCCTTGTTTCGTCTACGCAAACACGGCGCGGTAATGTAGGCACACAAAGCTTAGTTTCCACTGAACAACAGCAGCAATCGCAGCAGCAGAAGGAAAGGCTTCGTTGGGTTCAAAGGAATTACATGACTTACAATTACTGCACTGATTCTAAGAGGTTTCCAAATGGCTTTCCTCCAGAATGCACTAGACAGAATTTCAGTTGAATATAGCCAGTTAGTCGTAGCTGTAGAATACTATATCATCATGACCAATTCATTCTTTCATTCCTCAATTCATTTTCCC

Ace file of the UniGene sp_v1.1_unigene70114

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase 8 n=1 Tax=Malus x domestica RepID=C0IRI1_MALDO	-	-	1.0e-20	52%
FL-Next	tr=Pollen major allergen No.121 isoform 1; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	52%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 22	-	-	5.06616e-21	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	5.06616e-21	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cold	GO:0009409	Biological Process	5.06616e-21	62%
Blast2go	response to mechanical stimulus	GO:0009612	Biological Process	5.06616e-21	62%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	5.06616e-21	62%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	5.06616e-21	62%
Blast2go	response to heat	GO:0009408	Biological Process	5.06616e-21	62%
Blast2go	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	5.06616e-21	62%
Blast2go	cell wall	GO:0005618	Cellular Component	5.06616e-21	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	5.06616e-21	62%
Blast2go	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	5.06616e-21	62%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	5.06616e-21	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q588C0

Fln msg: your sequence is shorter than subject: 108 - 278

Fln protein: VVTLAVTHLVKTDWSKAPFVATYRNFKVESCKTRKNGSSCSLVSSTQTRRGNVGTQSLVSTEQQQQSQQQKERLRWVQRNYMTYNYCTDSKRFPNGFPPECTRQNFS*

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTGTAAAGACGGACTGGTCTAAAGCTCCCTTCGTCGCAACTTATCGCAATTTTAAAGTTGAGTCATGTAAAACCAGGAAGAACGGTTCCTCCTGCAGCCTTGTTTCGTCTACGCAAACACGGCGCGGTAATGTAGGCACACAAAGCTTAGTTTCCACTGAACAACAGCAGCAATCGCAGCAGCAGAAGGAAAGGCTTCGTTGGGTTCAAAGGAATTACATGACTTACAATTACTGCACTGATTCTAAGAGGTTTCCAAATGGCTTTCCTCCAGAATGCACTAGACAGAATTTCAGTTGA___ATATAGCCAGTTAGTCGTAGCTGTAGAATACTATATCATCATGACCAATTCATTCTTTCATTCCTCAATTCATTTTCCC

Fln Alignment:

sp_v1.1_unigene70114___VKTDWSKAPFVATYRNFKVESCKTRKNGSSCSLVSSTQTRRGNVGTQSLVSTEXXXXXXXXKERLRWVQRNYMTYNYCTDSKRFPNGFPPECTRQ
Q588C0_______________VKIDWSKSPFVASYGNFKAETCSA---SSDCSVNSW-------YGAQALELSE--------QEKLEWVRKNYMIYNYCTDSKRFPQGFPAECTRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain