SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene70005

Length: 352 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene70005
CGTCGTGACCTTGGCTGTCACTCATGATTTTGCGTTTGTGGACGCGGACAAAGGGAACTATCTGAACTACCACGAGCGTCGTGATCTTGGCTGTCGGTGATGATTGCGTATGACAACACTCTGTGGAACGGAAGCGTTGCGGCTCCCCCCGCAGATTACATGGACGAACGGTTCAGAAACATGAGAATTTTCATATTGGAAGTGAACAAGGTCCTTGCTGCTGATCCCCGCGTCGAGATTGCCCAAATCCCAGTCGCCGATGGAATCACGCTGTGCAGGCGTCTCTCTTGAACTTTATCAGCAATGCAATTCCTATTCCTTATTTCAATAGGTTGGAAATAGGAATTTCTTA

Ace file of the UniGene sp_v1.1_unigene70005

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caffeoyl-CoA O-methyltransferase (Fragment) n=2 Tax=core eudicotyledons RepID=Q2YHN2_PLAMJ	-	-	5.0e-22	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	caffeoyl- o-methyltransferase	-	-	1.46108e-27	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Caffeoyl-CoA O-methyltransferase.	EC:2.1.1.104	-	1.46108e-27	77%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine metabolism	00360	1.46108e-27	77%
Blast2go	Phenylpropanoid biosynthesis	00940	1.46108e-27	77%
Blast2go	Flavonoid biosynthesis	00941	1.46108e-27	77%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	1.46108e-27	77%
Blast2go	Biosynthesis of phenylpropanoids	01061	1.46108e-27	77%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.46108e-27	77%
Blast2go	Metabolic pathways	01100	1.46108e-27	77%
Blast2go	Biosynthesis of secondary metabolites	01110	1.46108e-27	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	1.46108e-27	77%
Blast2go	coumarin biosynthetic process	GO:0009805	Biological Process	1.46108e-27	77%
Blast2go	caffeoyl-CoA O-methyltransferase activity	GO:0042409	Molecular Function	1.46108e-27	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD15

Fln msg: Separated hits, possible frame ERROR between 79 and 100, your sequence is shorter than subject: 97 - 251

Fln protein: VVTLAVTHDFAFVDADKGNYLNYHExxxxxxxxMIAYDNTLWNGSVAAPPADYMDERFRNMRIFILEVNKVLAADPRVEIAQIPVADGITLCRRLS*

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGATTTTGCGTTTGTGGACGCGGACAAAGGGAACTATCTGAACTACCACGAGCGxxxxxxxxxxxxxxxxxxxxxGATGATTGCGTATGACAACACTCTGTGGAACGGAAGCGTTGCGGCTCCCCCCGCAGATTACATGGACGAACGGTTCAGAAACATGAGAATTTTCATATTGGAAGTGAACAAGGTCCTTGCTGCTGATCCCCGCGTCGAGATTGCCCAAATCCCAGTCGCCGATGGAATCACGCTGTGCAGGCGTCTCTCTTGAACTTTATCAGCAATGCAATTCCTATTCCTTATTTCAATAGGTTGGAAATAGGAATTTCTTA

Fln Alignment:

sp_v1.1_unigene70005___DFAFVDADKGNYLNYHERxxxxxxxMIAYDNTLWNGSVAAPPADYMDERFRNMRIFILEVNKVLAADPRVEIAQIPVADGITLCRRLS
D5AD15_______________DFAFVDADKGNYLNYHKRxxxxxxxVIAYDNTLWKGTVASPPEVHMNEGFRNVRLFTLEVNKALAADPRIEIAQIPVADGITLCRRLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain