SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69870

Length: 423 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene69870
GATCCTTAATCTCACCTTTACTCAGGTAGGTAGAAAGGAACTATTCCACAGGGTCACAGGTCAAAGAGACACATGTTATGGTTCCTATTCCTATGTATGGAGTAGTTGGAAATTATGCTTCTACTATTTATGTGTCTGCTGTGAAAGCTAACATGTTGGATAGGGTTGAACCTGAGCTCAAAACCCTCATGGAAGCTATTAACAGTAATCTAAGTTTTTGAAATTTCATCAAGGATTAGTCTGTGCCAAGAGATACCAGACTAAAGGTCATGCGAGAAATTTTTGAGGAGTCCAGCTTTTCAGACATAACTAAGAACTTCTTAGGTAAGGATGGATTGAATGATTCGATCGTATTGTATGCTCTGCATTTCCGGTTATCCCACGAGATGAGTTTTGGCTACAGATTTCCAGACAGATAGGCTA

Ace file of the UniGene sp_v1.1_unigene69870

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP synthase subunit O, mitochondrial n=2 Tax=Ipomoea batatas RepID=ATPO_IPOBA	-	-	9.0e-20	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	oligomycin sensitivity conferring protein	-	-	1.57319e-38	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	1.57319e-38	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMQ3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 70 aas, your sequence is shorter than subject: 139 - 252

Fln protein: SLISPLLR*VERNYSTGSQVKETHVMVPIPMYGVVGNYASTIYVSAVKANMLDRVEPELKTLMEAINSNLSF*NFIKD*SVPRDTRLKVMREIFEESSFSDITKNFLGKDGLNDSIVLYALHFRLSHEMSFGYRFPDR*

Protein Length: 140

Fln nts: GATCCTTAATCTCACCTTTACTCAGGTAGGTAGAAAGGAACTATTCCACAGGGTCACAGGTCAAAGAGACACATGTTATGGTTCCTATTCCTATGTATGGAGTAGTTGGAAATTATGCTTCTACTATTTATGTGTCTGCTGTGAAAGCTAACATGTTGGATAGGGTTGAACCTGAGCTCAAAACCCTCATGGAAGCTATTAACAGTAATCTAAGTTTTTGAAATTTCATCAAGGATTAGTCTGTGCCAAGAGATACCAGACTAAAGGTCATGCGAGAAATTTTTGAGGAGTCCAGCTTTTCAGACATAACTAAGAACTTCTTAGGTAAGGATGGATTGAATGATTCGATCGTATTGTATGCTCTGCATTTCCGGTTATCCCACGAGATGAGTTTTGGCTACAGATTTCCAGACAGATAGGCTA

Fln Alignment:

sp_v1.1_unigene69870___ISPLLR*VERNYSTGSQVKETHVMVPIPMYGVVGNYASTIYVSAVKANMLDRVEPELKTLMEAINSNLSF*NFIKD*SVPRDTRLKVMREIFEESSFSDITKNF------LGKDGLNDSIVLYALHFRLSHE
A9NMQ3_______________ISPLFG-VARSYSAGSQVKETHVMVPIPMYGVAGNYASALYVSAVKANMLDRVESELKTLMEAVNNSPNFRIFIKDLSVPRDTRLKAVREIFEESSFSDITKNFLAVAAELGRLRQLESIVKAFMRLTLAHK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain