SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69816

Length: 280 nt

UniGene Fasta

>sp_v1.1_unigene69816
GAACTGGCAAGTCCAGTATGATTGCTACCATGGCTAACTTTCTGGATTACGACATCTACGACCTGGAGCTGACCCAAGTGAAGAACAATGCGGCACTGAGGAAGCTTCTCATCGCCACCACCAACAAATCGATAATTGTGATCGAAGATATCGACTGTTCTCTCGATCTCTCTGATCGCAAGAAGAAGAAGAAGAAGCCACAGAAAGATGGCGAGGAGGACGAGAAGCCGCCGGAGCCTGACAAAGCGGATGAGATCGAAGCGAATCAGGACAGCAAAGT

Ace file of the UniGene sp_v1.1_unigene69816

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATPase 2 n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q5URW9_HORVD	-	-	1.0e-18	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	cell division protein aaa atpase family	-	-	9.0846e-23	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLW3

Fln msg: Distance to subject end: 139 aas, your sequence is shorter than subject: 92 - 473

Fln protein: TGKSSMIATMANFLDYDIYDLELTQVKNNAALRKLLIATTNKSIIVIEDIDCSLDLSDRKKKKKKPQKDGEEDEKPPEPDKADEIEANQDSK

Protein Length: 93

Fln nts: GAACTGGCAAGTCCAGTATGATTGCTACCATGGCTAACTTTCTGGATTACGACATCTACGACCTGGAGCTGACCCAAGTGAAGAACAATGCGGCACTGAGGAAGCTTCTCATCGCCACCACCAACAAATCGATAATTGTGATCGAAGATATCGACTGTTCTCTCGATCTCTCTGATCGCAAGAAGAAGAAGAAGAAGCCACAGAAAGATGGCGAGGAGGACGAGAAGCCGCCGGAGCCTGACAAAGCGGATGAGATCGAAGCGAATCAGGACAGCAAAGT

Fln Alignment:

sp_v1.1_unigene69816___TGKSSMIATMANFLDYDIYDLELTQVKNNAALRKLLIATTNKSIIVIEDIDCSLDLSDR
B8LLW3_______________TGKSSMIAAMANFLDYDIYDLELTQVKNNTELRKLLVATTNKSIIVIEDIDCSLDLSDR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain