SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69740

Length: 399 nt

UniGene Fasta

>sp_v1.1_unigene69740
CGTCGTGACCTTGGCTGTCACTCATATGCTGGCAGACGAAGAAGTAGAGGAGTCGTCGACGAGGAATTCTACTTTCCTCAACGTTGTGCCCCTCGGCAATGTTGGTGCTGGAAAGTCAGCTGTATTAAACAGTCTGATTGGTCATCCTGTGCTGCCTACAGGAGAAAATGGAGCAACTCGTGCCCCAATCTTAATTGATTTGCAACGAGACAGTTCGGTTAGCAGCAGGGCAATAATTCTTCAAATTGAAAACAAGTCTCAGACAGTTTCAACACATGAGGATTGGAGAGTAGCATTCGATTCTGCTGCAAATGGACCTTCTGACTATTCAAATTCTGTTGCAGATTCACCAAGGATAAGTTCCTCAAGTAATAATGGCCACAGTCGACGGCTTAGTGA

Ace file of the UniGene sp_v1.1_unigene69740

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADL6; ADL6 (DYNAMIN-LIKE PROTEIN 6); GTPase	-	-	9.0e-28	78%
FL-Next	sp=Dynamin-2A; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%
Blast2go	protein	-	-	8.65959e-29	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	synaptic vesicle endocytosis	GO:0048488	Biological Process	8.65959e-29	86%
Blast2go	Golgi to vacuole transport	GO:0006896	Biological Process	8.65959e-29	86%
Blast2go	clathrin binding	GO:0030276	Molecular Function	8.65959e-29	86%
Blast2go	vacuole	GO:0005773	Cellular Component	8.65959e-29	86%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	8.65959e-29	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.65959e-29	86%
Blast2go	clathrin-coated endocytic vesicle	GO:0045334	Cellular Component	8.65959e-29	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Dynamin, GTPase domain	IPR001401	-	8.65959e-29	86%
Blast2go	Dynamin, GTPase region, conserved site	IPR019762	-	8.65959e-29	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9SE83

Fln msg: Distance to subject end: 768 aas, atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 124 - 914

Fln protein: MLADEEVEESSTRNSTFLNVVPLGNVGAGKSAVLNSLIGHPVLPTGENGATRAPILIDLQRDSSVSSRAIILQIENKSQTVSTHEDWRVAFDSAANGPSDYSNSVADSPRISSSSNNGHSRRLS

Protein Length: 125

Fln nts: CGTCGTGACCTTGGCTGTCACTCAT_-_ATGCTGGCAGACGAAGAAGTAGAGGAGTCGTCGACGAGGAATTCTACTTTCCTCAACGTTGTGCCCCTCGGCAATGTTGGTGCTGGAAAGTCAGCTGTATTAAACAGTCTGATTGGTCATCCTGTGCTGCCTACAGGAGAAAATGGAGCAACTCGTGCCCCAATCTTAATTGATTTGCAACGAGACAGTTCGGTTAGCAGCAGGGCAATAATTCTTCAAATTGAAAACAAGTCTCAGACAGTTTCAACACATGAGGATTGGAGAGTAGCATTCGATTCTGCTGCAAATGGACCTTCTGACTATTCAAATTCTGTTGCAGATTCACCAAGGATAAGTTCCTCAAGTAATAATGGCCACAGTCGACGGCTTAGTGA

Fln Alignment:

sp_v1.1_unigene69740___MLADEEVEE--SSTRNSTFLNVVPLGNVGAGKSAVLNSLIGHPVLPTGENGATRAPILIDLQRDSSVSSRAIILQIENKSQTVS
Q9SE83_______________LLADEDPDETSSSKRPATFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPIIIELSRESSLSSKAIILQIDNKSQQVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain