SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69665

Length: 355 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene69665
ATGGGGTATGGGAATGAGGAACACTCATTTGGTGAGAAAGGAAAACGTTATGTAAAATGGGCTGCGAGTATGGCAGAAGGACTGGATGCAGGTGTACCTTGGATCATGTGTCAACAAAGTGATGCACCGGGGAATATTATAACTTCGTGCCTTGGTTTCACTGCGATGGACAAGAAATCGTTTCAATCACTTTTGCCAGTTTTGGAAATCCAGAGGGACATTGTGGACAATATGTTCAAGGGACATGCCACGCAGATACCTCACATTCTGTTGTGATCCAAGCATGTCAAGGAAAGAAGAGCTGCTTAATCCCGGTGTCAACAAAGATATTTGGAGGTGATCCATGCCCAGGAAC

Ace file of the UniGene sp_v1.1_unigene69665

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-galactosidase n=1 Tax=Persea americana RepID=Q0EDB0_PERAE	-	-	9.0e-17	59%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	protein	-	-	1.68193e-16	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.68193e-16	72%
Blast2go	vacuole	GO:0005773	Cellular Component	1.68193e-16	72%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	1.68193e-16	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.68193e-16	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 35	IPR001944	-	1.68193e-16	72%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	1.68193e-16	72%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLU8

Fln msg: Separated hits, possible frame ERROR between 159 and 168, STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 118 - 836

Fln protein: MGYGNEEHSFGEKGKRYVKWAASMAEGLDAGVPWIMCQQSDAPGNIITSCLGxxxxGQEIVSITFASFGNPEGHCGQYVQGTCHADTSHSVVIQACQGKKSCLIPVSTKIFGGDPCPG

Protein Length: 119

Fln nts: ATGGGGTATGGGAATGAGGAACACTCATTTGGTGAGAAAGGAAAACGTTATGTAAAATGGGCTGCGAGTATGGCAGAAGGACTGGATGCAGGTGTACCTTGGATCATGTGTCAACAAAGTGATGCACCGGGGAATATTATAACTTCGTGCCTTGGTTTxxxxxxxxxTGGACAAGAAATCGTTTCAATCACTTTTGCCAGTTTTGGAAATCCAGAGGGACATTGTGGACAATATGTTCAAGGGACATGCCACGCAGATACCTCACATTCTGTTGTGATCCAAGCATGTCAAGGAAAGAAGAGCTGCTTAATCCCGGTGTCAACAAAGATATTTGGAGGTGATCCATGCCCAGGAAC

Fln Alignment:

sp_v1.1_unigene69665___YGNEEHSFGEKGKRYVKWAASMAEGLDAGVPWIMCQQSDAPGNIITSCLGFxxxGQEIVSITFASFGNPEGHCGQYVQGTCHADTSHSVVIQACQGKKSCLIPVSTKIFGGDPCPG
B8LLU8_______________YKPEEMEYGLAGAQYMNWAAQMAVGMDTGVPWVMCKQDDAPDPVINTCNGFxxxGQRISAIKFASFGTPQGLCGSFQQGDCHSPNSVATIQKKCMGLRKCSLSVSEKIFGGDPCPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain