SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69638

Length: 413 nt

UniGene Fasta

>sp_v1.1_unigene69638
TATTTGATCCGATGTGGGATTGCATCAAGGAAATGAAGAAAAAGGGGGTCGTGTCCTTGGTGTCATTCTCCTATATGTTTTGGAATTATGTGCATGACGGTAAGGTTGAGGAGGCAAGGATGACATTTGAGGTGATGGAGCAATATGGATTCCGATAGGATGTTGTTGCACTAAATTGTCTTCTCAGTGCGTTGTGCAGGAAAAAATAGGTGAAAGTGATGGTGGAATTCCTAGATAGAATGAAGGTGAGGATCACCCCAGATGTTGACACGTATGCATTGCTACTGGAGAGATGTGATATCGTACATGATGTGACTAATGCTAGAATCACCTTTGGAGAAATGGTTAGCCGCATCGGATGGCTGTTGAACAACATATCGGCTTATAATGCATTCTTGAGCATTCTGGTCAAT

Ace file of the UniGene sp_v1.1_unigene69638

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	3.0e-28	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	pentatricopeptide repeat-containing	-	-	5.60519e-45	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUW1

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 137 - 504

Fln protein: FDPMWDCIKEMKKKGVVSLVSFSYMFWNYVHDGKVEEARMTFEVMEQYGFR*DVVALNCLLSALCRKK*VKVMVEFLDRMKVRITPDVDTYALLLERCDIVHDVTNARITFGEMVSRIGWLLNNISAYNAFLSILVN

Protein Length: 138

Fln nts: TATTTGATCCGATGTGGGATTGCATCAAGGAAATGAAGAAAAAGGGGGTCGTGTCCTTGGTGTCATTCTCCTATATGTTTTGGAATTATGTGCATGACGGTAAGGTTGAGGAGGCAAGGATGACATTTGAGGTGATGGAGCAATATGGATTCCGATAGGATGTTGTTGCACTAAATTGTCTTCTCAGTGCGTTGTGCAGGAAAAAATAGGTGAAAGTGATGGTGGAATTCCTAGATAGAATGAAGGTGAGGATCACCCCAGATGTTGACACGTATGCATTGCTACTGGAGAGATGTGATATCGTACATGATGTGACTAATGCTAGAATCACCTTTGGAGAAATGGTTAGCCGCATCGGATGGCTGTTGAACAACATATCGGCTTATAATGCATTCTTGAGCATTCTGGTCAAT

Fln Alignment:

sp_v1.1_unigene69638___FDPMWDCIKEMKKKGVVSLVSFSYMFWNYVHDGKVEEARMTFEVMEQYGFR*DVVALNCLLSALCRKK*VKVMVEFLDRMKVRITPDVDTYALLLERCDIVHDVTNARITFGEMVSRIGWLLNNISAYNAFLSILVN
A9NUW1_______________FDAMWDCIKIMKNQGIVSTETLSSVFGNYVQAGKVDEARMTFEVMEQYGCRQDVVALNCYISALCRYKQVKAALEFFDSVKERIAPDADTYALLLEGWEIEGNVSNARSTFGEMIARLGWMPNNTSAYNAFLSTLVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain