SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene69635

Length: 439 nt

UniGene Fasta

>sp_v1.1_unigene69635
CAATTACTTTTGTGAAGTTGTTCCTCGTAATGTATTGTCAAAGTTTTACTAATGAGATTGAGAAGGAATGTGCTCAAGATCATTTCTTTGATGTGATCACCAACACAATTGGTCTAATTGTTGTTATTCTTGCAAGTACTCTCTACTGGTGGATAGATCCTACTAGAGCAATTGTGGAACAAAACATGTGGGCTTAAAATCACTCTGGAAGCTATGACCAGCAACTGCAAGCGTTGGCATGGCGACAGGGCAATTCAATTACTTTGGCAATTAATCAATCAGTCTGTGGCTATATTTATATTTACCTATTATGCCTTCTTTTGTAAAGTCGGGAGGCGCAGCACGCTCCATTGACTGTGTACTGATTTCAATCTTGTAGCACTGGACATGGCCGGCCACCCAGCAGGCCATGGAGATATTTTGTAGTATTCTTGGTATT

Ace file of the UniGene sp_v1.1_unigene69635

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metal tolerance protein 11 n=3 Tax=Arabidopsis RepID=MTP11_ARATH	-	-	2.0e-15	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	metal tolerance protein	-	-	2.73123e-19	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to copper ion	GO:0046688	Biological Process	2.73123e-19	77%
Blast2go	cellular manganese ion homeostasis	GO:0030026	Biological Process	2.73123e-19	77%
Blast2go	response to manganese ion	GO:0010042	Biological Process	2.73123e-19	77%
Blast2go	manganese:hydrogen antiporter activity	GO:0010486	Molecular Function	2.73123e-19	77%
Blast2go	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	2.73123e-19	77%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	2.73123e-19	77%
Blast2go	late endosome	GO:0005770	Cellular Component	2.73123e-19	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTR8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 27 aas, your sequence is shorter than subject: 65 - 401

Fln protein: ITFVKLFLVMYCQSFTNEIEKECAQDHFFDVITNTIGLIVVILASTLYWWIDPTRAIVEQNMWA*

Protein Length: 66

Fln nts: CAATTACTTTTGTGAAGTTGTTCCTCGTAATGTATTGTCAAAGTTTTACTAATGAGATTGAGAAGGAATGTGCTCAAGATCATTTCTTTGATGTGATCACCAACACAATTGGTCTAATTGTTGTTATTCTTGCAAGTACTCTCTACTGGTGGATAGATCCTACTAGAGCAATTGTGGAACAAAACATGTGGGCTTAAAATCACTCTGGAAGCTATGACCAGCAACTGCAAGCGTTGGCATGGCGACAGGGCAATTCAATTACTTTGGCAATTAATCAATCAGTCTGTGGCTATATTTATATTTACCTATTATGCCTTCTTTTGTAAAGTCGGGAGGCGCAGCACGCTCCATTGACTGTGTACTGATTTCAATCTTGTAGCACTGGACATGGCCGGCCACCCAGCAGGCCATGGAGATATTTTGTAGTATTCTTGGTATT

Fln Alignment:

sp_v1.1_unigene69635___ITFVKLFLVMYCQSFTNEIEKECAQDHFFDVITNTIGLIVVILASTLYWWIDPTRAIV
A9NTR8_______________VTLVKLFLVLYCRSFTNEIVKAFAQDHFFDVITNSIGLIAAILASTLYWWIDPAGAIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain